RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 NDUFB7P17568 137 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 ALOX5APP20292 161 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 PAICSP22234 425 aaKnown RBP6.91□□□□□ -1.3
USP28-215ENST00000545608 PRKACGP22612 351 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 GLRA1P23415 457 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 SAA4P35542 130 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 TGFBR2P37173 567 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 GABRA2P47869 451 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 GPM6AP51674 278 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 UBE2E1P51965 193 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 CAV3P56539 151 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 CDK5Q00535 292 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 EGR3Q06889 387 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 GK3PQ14409 553 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 TMEM236Q5W0B7 351 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 SLC35E4Q6ICL7 350 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 C1orf122Q6ZSJ8 110 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 KRT74Q7RTS7 529 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 ZDHHC23Q8IYP9 409 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 HS3ST5Q8IZT8 346 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 FTMTQ8N4E7 242 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 ZNRF1Q8ND25 227 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 BBS1Q8NFJ9 593 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 CANT1Q8WVQ1 401 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 C17orf50Q8WW18 174 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 UBE2FQ969M7 185 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 CCDC124Q96CT7 223 aaKnown RBP6.91□□□□□ -1.3
USP28-215ENST00000545608 DUS3LQ96G46 650 aaKnown RBP6.91□□□□□ -1.3
USP28-215ENST00000545608 HIST1H2AAQ96QV6 131 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 PPA2Q9H2U2 334 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 OR51I2Q9H344 312 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 NIPAL2Q9H841 368 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 ABCB9Q9NP78 766 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 ZNF222Q9UK12 451 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 LRP12Q9Y561 859 aa6.91□□□□□ -1.3
USP28-215ENST00000545608 A0A1W2PQ09 198 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 PRR32B1ATL7 298 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 ZNF732B4DXR9 585 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 PAHP00439 452 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 HMGN1P05114 100 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 PSG2P11465 335 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 OSMP13725 252 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 SLC2A5P22732 501 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 LORP23490 312 aaPredicted RBP6.9□□□□□ -1.3
USP28-215ENST00000545608 PAX6P26367 422 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 RPS7P62081 194 aaKnown RBP6.9□□□□□ -1.3
USP28-215ENST00000545608 GNG3P63215 75 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 ACSM1Q08AH1 577 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 CEP78Q5JTW2 689 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 SLC35D3Q5M8T2 416 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 HIST2H2BDQ6DRA6 164 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 MOB3CQ70IA8 216 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 KRT77Q7Z794 578 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 C1QL4Q86Z23 238 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 OR5R1Q8NH85 324 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 PPP1R35Q8TAP8 253 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 FAM110DQ8TAY7 271 aaPredicted RBP6.9□□□□□ -1.3
USP28-215ENST00000545608 AQP3Q92482 292 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 RORBQ92753 470 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 ASB9Q96DX5 294 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 AJUBAQ96IF1 538 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 LRGUKQ96M69 825 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 METTL8Q9H825 291 aaKnown RBP6.9□□□□□ -1.3
USP28-215ENST00000545608 FAM206AQ9NX38 181 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 LAMP5Q9UJQ1 280 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 SIGLEC9Q9Y336 463 aa6.9□□□□□ -1.3
USP28-215ENST00000545608 A0A0U1RQV5 110 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 TMEM269A0A1B0GVZ9 245 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 SHISA3A0PJX4 238 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 CCDC182A6NF36 153 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 ANKRD61A6NGH8 418 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 H0YAE9 185 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 H3BUX3 64 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 GNGT2O14610 69 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 CIB2O75838 187 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 IGLV3-1P01715 115 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 MRPL3P09001 348 aaKnown RBP6.89□□□□□ -1.31
USP28-215ENST00000545608 ADMP35318 185 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 RANBP1P43487 201 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 ERVFRD-1P60508 538 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 SLC34A1Q06495 639 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 APOFQ13790 326 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 LY6EQ16553 131 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 CEACAM21Q3KPI0 293 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 NCR3LG1Q68D85 454 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 HAGHLQ6PII5 290 aaPredicted RBP6.89□□□□□ -1.31
USP28-215ENST00000545608 MKXQ8IYA7 352 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 FAM185AQ8N0U4 392 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 C11orf42Q8N5U0 333 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 PAPD5Q8NDF8 572 aaKnown RBP6.89□□□□□ -1.31
USP28-215ENST00000545608 BEND2Q8NDZ0 799 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 TMEM185AQ8NFB2 350 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 OR5A2Q8NGI9 324 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 ZNF671Q8TAW3 534 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 OR51E1Q8TCB6 317 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 SDSLQ96GA7 329 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 ZNF488Q96MN9 340 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 TEAD3Q99594 435 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 SSX3Q99909 188 aa6.89□□□□□ -1.31
USP28-215ENST00000545608 THTPAQ9BU02 230 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms