RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SYNGR1O43759 233 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 NOS1APO75052 506 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-209ENST00000532725 LALBAP00709 142 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 ACAA1P09110 424 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-209ENST00000532725 GLRA1P23415 457 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 MPZP25189 248 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 NPY4RP50391 375 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 CDK5R1Q15078 307 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 AHSA2Q719I0 299 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 CALHM1Q8IU99 346 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 STX19Q8N4C7 294 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 OR13C3Q8NGS6 347 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 TRMT10AQ8TBZ6 339 aaKnown RBP16.52■□□□□ 0.24
CPSF1-209ENST00000532725 NPRL2Q8WTW4 380 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 CCL13Q99616 98 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 COMMD4Q9H0A8 199 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 C7orf69Q9H7B7 122 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 SNTG1Q9NSN8 517 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 RASL12Q9NYN1 266 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 OPN4Q9UHM6 478 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 ZNF20P17024 532 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 SRD5A1P18405 259 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 ATF1P18846 271 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 HSPA13P48723 471 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 PAX8Q06710 450 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 STUMQ69YW2 141 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 POC1AQ8NBT0 407 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 DNAAF1Q8NEP3 725 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 ANGPTL6Q8NI99 470 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 RAB40AQ8WXH6 277 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 PKIBQ9C010 78 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 DNAJB11Q9UBS4 358 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 OR5V1Q9UGF6 321 aa16.51■□□□□ 0.23
CPSF1-209ENST00000532725 KIR2DS1A0A191URI9 304 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 PTGES3LE9PB15 166 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 SLC1A7O00341 560 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 TMPRSS2O15393 492 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 PGA5P0DJD9 388 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 KRTAP21-3Q3LHN1 58 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 RNLSQ5VYX0 342 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 PARP16Q8N5Y8 322 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 NANOGP1Q8N7R0 232 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 RGP1Q92546 391 aaPredicted RBP16.5■□□□□ 0.23
CPSF1-209ENST00000532725 TMIGD2Q96BF3 282 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 ZNF488Q96MN9 340 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 DNTTIP1Q9H147 329 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 SMURF1Q9HCE7 757 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 NLKQ9UBE8 527 aa16.5■□□□□ 0.23
CPSF1-209ENST00000532725 LOC105371242A0A075B767 164 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 IGHV2-70DA0A0C4DH43 119 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 A0A1B0GW55 424 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 OR2AT4A6NND4 320 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 DVL1O14640 695 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 ALX3O95076 343 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 MT-ND2P03891 347 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 CDK1P06493 297 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 DUX4L2P0CJ85 424 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 DUX4L3P0CJ86 424 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 DUX4L4P0CJ87 422 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 DUX4L5P0CJ88 424 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 DUX4L6P0CJ89 424 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 DUX4L7P0CJ90 424 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 PRKACBP22694 351 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 SRP14P37108 136 aaKnown RBP16.49■□□□□ 0.23
CPSF1-209ENST00000532725 ERVK11-1P61568 191 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 IL24Q13007 206 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 CNN3Q15417 329 aaKnown RBP16.49■□□□□ 0.23
CPSF1-209ENST00000532725 DMKNQ6E0U4 476 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-209ENST00000532725 DUX4L9Q6RFH8 374 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-209ENST00000532725 ACP7Q6ZNF0 438 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 ZNF788Q6ZQV5 615 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 SERPINA12Q8IW75 414 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 BORCS8Q96FH0 119 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 NRIP2Q9BQI9 281 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 SCN3BQ9NY72 215 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 DUX4Q9UBX2 424 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 POLDIP2Q9Y2S7 368 aa16.49■□□□□ 0.23
CPSF1-209ENST00000532725 IGKV1D-17A0A075B6S4 117 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 C22orf46C9J442 243 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 TFF1P04155 84 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 PSG2P11465 335 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 AZGP1P25311 298 aaKnown RBP16.48■□□□□ 0.23
CPSF1-209ENST00000532725 VHLP40337 213 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 RBP2P50120 134 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 ATP1B3P54709 279 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 DOC2BQ14184 412 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 C11orf91Q3C1V1 193 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 CD276Q5ZPR3 534 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 SLC36A1Q7Z2H8 476 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 OR5D14Q8NGL3 314 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 SGCDQ92629 289 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 GHSRQ92847 366 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 MYDGFQ969H8 173 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 SMIM19Q96E16 107 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 NUDT16L1Q9BRJ7 211 aaKnown RBP16.48■□□□□ 0.23
CPSF1-209ENST00000532725 DUSP21Q9H596 190 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 ZCCHC4Q9H5U6 513 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 HES4Q9HCC6 221 aa16.48■□□□□ 0.23
CPSF1-209ENST00000532725 PAK1IP1Q9NWT1 392 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-209ENST00000532725 MTCH1Q9NZJ7 389 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms