RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ERVFRD-1P60508 538 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 KLRD1Q13241 179 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 SNCBQ16143 134 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 SMN1Q16637 294 aaKnown RBP8.75□□□□□ -1.01
CD44-227ENST00000528086 CD276Q5ZPR3 534 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 LAIR2Q6ISS4 152 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 THAP5Q7Z6K1 395 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 COMMD2Q86X83 199 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 PDZD9Q8IXQ8 264 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 OR51A4Q8NGJ6 313 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 ITFG2Q969R8 447 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 SDSLQ96GA7 329 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 DNTTIP1Q9H147 329 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 CNTD2Q9H8S5 307 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 ISG20L2Q9H9L3 353 aaKnown RBP8.75□□□□□ -1.01
CD44-227ENST00000528086 MRPS18AQ9NVS2 196 aaKnown RBP8.75□□□□□ -1.01
CD44-227ENST00000528086 MTCH1Q9NZJ7 389 aa8.75□□□□□ -1.01
CD44-227ENST00000528086 IGHV1-69DA0A0B4J2H0 117 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 LOC100130705A0A1B0GUX0 176 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 LOC107986453A0A1B0GWG9 222 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 RFPL4AA6NLU0 287 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 ANKRD65E5RJM6 399 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 RFPL4AL1F8VTS6 287 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 CLDN34H7C241 214 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 TRIM77I1YAP6 450 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 J3QT63 122 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 CLIC3O95833 236 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 ECDO95905 644 aaPredicted RBP8.74□□□□□ -1.01
CD44-227ENST00000528086 IGHV1-69P01742 117 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 IGHA1P01876 353 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 LIPFP07098 398 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 RNASE1P07998 156 aaKnown RBP8.74□□□□□ -1.01
CD44-227ENST00000528086 HKR1P10072 659 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 GLRA1P23415 457 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 HAAOP46952 286 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 CAV3P56539 151 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 RELBQ01201 579 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 BAMBIQ13145 260 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 C11orf91Q3C1V1 193 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 AWAT1Q58HT5 328 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 ASPHD2Q6ICH7 369 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 Q6YL49 198 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 ZBTB49Q6ZSB9 765 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 SLC36A1Q7Z2H8 476 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 VMO1Q7Z5L0 202 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 LHFPL3Q86UP9 236 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 PNKDQ8N490 385 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 TRMT10AQ8TBZ6 339 aaKnown RBP8.74□□□□□ -1.01
CD44-227ENST00000528086 NPRL2Q8WTW4 380 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 C17orf50Q8WW18 174 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 LHX4Q969G2 390 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 RFKQ969G6 155 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 C9orf16Q9BUW7 83 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 CHST5Q9GZS9 411 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 MS4A7Q9GZW8 240 aaPredicted RBP8.74□□□□□ -1.01
CD44-227ENST00000528086 C19orf12Q9NSK7 152 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 IMPAD1Q9NX62 359 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 IL36RNQ9UBH0 155 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 GNG8Q9UK08 70 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.74□□□□□ -1.01
CD44-227ENST00000528086 GMPPBQ9Y5P6 360 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 KIAA2026Q5HYC2 2103 aa8.74□□□□□ -1.01
CD44-227ENST00000528086 A0A0U1RQK1 487 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 ANKRD61A6NGH8 418 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 HOXA3O43365 443 aaPredicted RBP8.73□□□□□ -1.01
CD44-227ENST00000528086 SYT7O43581 403 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 NDUFB3O43676 98 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 ISG15P05161 165 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 MELTFP08582 738 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 LIMS3P0CW19 117 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 LIMS4P0CW20 117 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 IL13RA1P78552 427 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 ADARB1P78563 741 aaKnown RBP8.73□□□□□ -1.01
CD44-227ENST00000528086 SCGB2A2Q13296 93 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 MEDAGQ5VYS4 303 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 LPCAT4Q643R3 524 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 XAF1Q6GPH4 301 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 TCF23Q7RTU1 214 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 ACBD7Q8N6N7 88 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 PNLDC1Q8NA58 520 aaKnown RBP8.73□□□□□ -1.01
CD44-227ENST00000528086 OR52I1Q8NGK6 324 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 RGP1Q92546 391 aaPredicted RBP8.73□□□□□ -1.01
CD44-227ENST00000528086 TMIGD2Q96BF3 282 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 C4orf36Q96KX1 117 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 HIST1H2AAQ96QV6 131 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 SIRT7Q9NRC8 400 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 DNAJB11Q9UBS4 358 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 SLC25A10Q9UBX3 287 aaPredicted RBP8.73□□□□□ -1.01
CD44-227ENST00000528086 KPTNQ9Y664 436 aa8.73□□□□□ -1.01
CD44-227ENST00000528086 SIRT4Q9Y6E7 314 aaPredicted RBP8.73□□□□□ -1.01
CD44-227ENST00000528086 IGKV1-12A0A0C4DH73 117 aa8.72□□□□□ -1.01
CD44-227ENST00000528086 DAPL1A0PJW8 107 aa8.72□□□□□ -1.01
CD44-227ENST00000528086 ZNF737O75373 536 aa8.72□□□□□ -1.01
CD44-227ENST00000528086 BAG2O95816 211 aa8.72□□□□□ -1.01
CD44-227ENST00000528086 IGKV1D-12P01611 117 aa8.72□□□□□ -1.01
CD44-227ENST00000528086 PEX2P28328 305 aa8.72□□□□□ -1.01
CD44-227ENST00000528086 PRDX2P32119 198 aa8.72□□□□□ -1.01
CD44-227ENST00000528086 ATP6V1E1P36543 226 aa8.72□□□□□ -1.01
CD44-227ENST00000528086 GABRA2P47869 451 aa8.72□□□□□ -1.01
CD44-227ENST00000528086 NPBWR2P48146 333 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms