RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CASP12Q6UXS9 341 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 PRSS48Q7RTY5 328 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 ZBTB8OSQ8IWT0 167 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 LGI3Q8N145 548 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 PDIK1LQ8N165 341 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 CA13Q8N1Q1 262 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 TMEM35BQ8NCS4 154 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 OR1K1Q8NGR3 316 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 ZNF502Q8TBZ5 544 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 PYROXD1Q8WU10 500 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 IL1F10Q8WWZ1 152 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 LZICQ8WZA0 190 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 NDRG1Q92597 394 aaKnown RBP3.78□□□□□ -1.8
CD44-220ENST00000525688 DNAJA3Q96EY1 480 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 ADTRPQ96IZ2 230 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 MS4A14Q96JA4 679 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 RCHY1Q96PM5 261 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 OR8B4Q96RC9 309 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 GPR22Q99680 433 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 CALN1Q9BXU9 219 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 NXF2Q9GZY0 626 aaKnown RBP3.78□□□□□ -1.8
CD44-220ENST00000525688 WDR41Q9HAD4 459 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 CTPS2Q9NRF8 586 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 PARVAQ9NVD7 372 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 IMPAD1Q9NX62 359 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 B3GNT2Q9NY97 397 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 MDFICQ9P1T7 246 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 PAK5Q9P286 719 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 ZNF107Q9UII5 783 aaPredicted RBP3.78□□□□□ -1.8
CD44-220ENST00000525688 KLHL21Q9UJP4 597 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 IGLON5A6NGN9 336 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 K7ERI5 159 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 PSMD12O00232 456 aaPredicted RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 NTN3O00634 580 aaPredicted RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 SOCS3O14543 225 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 PFDN6O15212 129 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 CRXO43186 299 aaPredicted RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 PHF1O43189 567 aaPredicted RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 SYNGR1O43759 233 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 DPM1O60762 260 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 ZG16O60844 167 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 GATBO75879 557 aaKnown RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 IGHV2-5P01817 119 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 IGHG1P01857 330 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 CD74P04233 296 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 HIST1H1EP10412 219 aaKnown RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 PVALBP20472 110 aaPredicted RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 MT3P25713 68 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 PSMA1P25786 263 aaKnown RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 KIR2DS4P43632 304 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 GABRA4P48169 554 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 HCCSP53701 268 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 AQP5P55064 265 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 FGF8P55075 233 aaPredicted RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 STXBP1P61764 594 aaKnown RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 TFAMQ00059 246 aaKnown RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 CD164Q04900 197 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 FCHO2Q0JRZ9 810 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 ST3GAL4Q11206 333 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 PRPSAP1Q14558 356 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 ZIC1Q15915 447 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 UNC50Q53HI1 259 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 ZC2HC1BQ5TFG8 222 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 TRIQKQ629K1 86 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 TMEM42Q69YG0 159 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 OR52E8Q6IFG1 317 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 FAAP20Q6NZ36 180 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 WDR82Q6UXN9 313 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 ADAMTSL5Q6ZMM2 481 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 CLVS1Q8IUQ0 354 aaPredicted RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 AQP11Q8NBQ7 271 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 TMEM161BQ8NDZ6 487 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 OR10X1Q8NGY0 326 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 RAB8BQ92930 207 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 NABP1Q96AH0 204 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 TESCQ96BS2 214 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 DNAJC19Q96DA6 116 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 HSFY1Q96LI6 401 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 LINC00479Q96M42 142 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 ZNF681Q96N22 645 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 TSNAXQ99598 290 aaKnown RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 NUDT9Q9BW91 350 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 NT5DC2Q9H857 520 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 RHOFQ9HBH0 211 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 MYOZ1Q9NP98 299 aaPredicted RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 TIGARQ9NQ88 270 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 FBXO6Q9NRD1 293 aaPredicted RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 DEPPQ9NTK1 212 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 Q9UF83 564 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 NDRG2Q9UN36 371 aaKnown RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 FARSAQ9Y285 508 aaKnown RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 HES2Q9Y543 173 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 COL4A4P53420 1690 aaPredicted RBP3.77□□□□□ -1.81
CD44-220ENST00000525688 BRWD1Q9NSI6 2320 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 RALGAPA2Q2PPJ7 1873 aa3.77□□□□□ -1.81
CD44-220ENST00000525688 MYO7AQ13402 2215 aa3.76□□□□□ -1.81
CD44-220ENST00000525688 NLRC5Q86WI3 1866 aa3.76□□□□□ -1.81
CD44-220ENST00000525688 TINCRA0A1B0GVN0 87 aa3.76□□□□□ -1.81
CD44-220ENST00000525688 ARL5CA6NH57 179 aa3.76□□□□□ -1.81
CD44-220ENST00000525688 LYRM9A8MSI8 78 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms