RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CEACAM18A8MTB9 384 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 KRTAP9-6A8MVA2 160 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR11H12B2RN74 326 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 DISC1C4P0D8 188 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 C12orf77C9JDV5 145 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PPP5D1E7EU14 171 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 F5H5T6 163 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 F6UB75 175 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 G3V2L1 256 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TSTD3H0UI37 97 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 C15orf65H3BRN8 121 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 J3QT63 122 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 K7EMT4 169 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 K7EPK0 472 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 M0QYV0 167 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 UPK2O00526 184 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 COPEO14579 308 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 XKRYO14609 159 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 AZIN1O14977 448 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PSPHP1O15172 72 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CHP2O43745 196 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 KLRC4O43908 158 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PLIN3O60664 434 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TBL1XO60907 577 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PFDN1O60925 122 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 NOS1APO75052 506 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CRLF1O75462 422 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 FOXH1O75593 365 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 LYPLA1O75608 230 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 REM1O75628 298 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRMUO75648 421 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 STK16O75716 305 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CNMDO75829 334 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZFAND5O76080 213 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ATG12O94817 140 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CNIH1O95406 144 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 KLF8O95600 359 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 AIFM1O95831 613 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 MOSP00540 346 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IFNA1P01562 189 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IFNA21P01568 189 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PPBPP02775 128 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CRYBA1P05813 215 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CRHP06850 196 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CTSLP07711 333 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GUSBP08236 651 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CD48P09326 243 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GIPP09681 153 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR5G3P0C626 314 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 NBEAP1P0C6P0 100 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 LINC00614P0C842 121 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GKN3PP0CG01 181 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RBMY1CP0DJD4 496 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PGA4P0DJD7 388 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PGA3P0DJD8 388 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SULT1A3P0DMM9 295 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SULT1A4P0DMN0 295 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR5H8P0DN80 308 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGKV1-13P0DP09 117 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CD37P11049 281 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 LAMP1P11279 417 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ERGP11308 486 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CD79AP11912 226 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CD99P14209 185 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 FOLR1P15328 257 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 KCNE1P15382 129 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CD1EP15812 388 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGLL1P15814 213 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GNB3P16520 340 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SELEP16581 610 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 AKR1C4P17516 323 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GABRG2P18507 467 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RAB3AP20336 220 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TAC1P20366 129 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PSMB1P20618 241 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 VDAC1P21796 283 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 HIST1H1TP22492 207 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV1-2P23083 117 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 S100A1P23297 94 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CXCR1P25024 350 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RPS12P25398 132 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 LMO2P25791 158 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SHC1P29353 583 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 DDTP30046 118 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RPL12P30050 165 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC6A1P30531 599 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TSPOP30536 169 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ADORA1P30542 326 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 FMO3P31513 532 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PYCR1P32322 319 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CEACAM6P40199 344 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PMELP40967 661 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 VDAC2P45880 294 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GALR1P47211 349 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GCLMP48507 274 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 MARCKSL1P49006 195 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SRP9P49458 86 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PSMB2P49721 201 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ACOT2P49753 483 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RAB7AP51149 207 aa0.45□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms