RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ACTG1P63261 375 aa12.17□□□□□ -0.46
CUX1-209ENST00000487284 SNTB1Q13884 538 aaKnown RBP12.17□□□□□ -0.46
CUX1-209ENST00000487284 PPA1Q15181 289 aa12.17□□□□□ -0.46
CUX1-209ENST00000487284 Q6ZTK2 550 aa12.17□□□□□ -0.46
CUX1-209ENST00000487284 OR56B1Q8NGI3 324 aa12.17□□□□□ -0.46
CUX1-209ENST00000487284 CREB3L1Q96BA8 519 aa12.17□□□□□ -0.46
CUX1-209ENST00000487284 CMBLQ96DG6 245 aa12.17□□□□□ -0.46
CUX1-209ENST00000487284 MUCL1Q96DR8 90 aa12.17□□□□□ -0.46
CUX1-209ENST00000487284 S100A13Q99584 98 aa12.17□□□□□ -0.46
CUX1-209ENST00000487284 OR10A4Q9H209 315 aa12.17□□□□□ -0.46
CUX1-209ENST00000487284 IL36GQ9NZH8 169 aa12.17□□□□□ -0.46
CUX1-209ENST00000487284 NPAP1Q9NZP6 1156 aa12.17□□□□□ -0.46
CUX1-209ENST00000487284 MRPL15Q9P015 296 aaKnown RBP12.17□□□□□ -0.46
CUX1-209ENST00000487284 COPZ2Q9P299 210 aa12.17□□□□□ -0.46
CUX1-209ENST00000487284 LRRK2Q5S007 2527 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 PQLC2LA1A4F0 135 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 TMEM235A6NFC5 223 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 FOXI3A8MTJ6 420 aaPredicted RBP12.16□□□□□ -0.46
CUX1-209ENST00000487284 GSTP1P09211 210 aaKnown RBP12.16□□□□□ -0.46
CUX1-209ENST00000487284 ZNF35P13682 527 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 SERPINA2P20848 420 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 CDNFQ49AH0 187 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 C1QTNF12Q5T7M4 302 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 AGAP6Q5VW22 663 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 RSBN1Q5VWQ0 802 aaPredicted RBP12.16□□□□□ -0.46
CUX1-209ENST00000487284 SEZ6L2Q6UXD5 910 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 ZNF554Q86TJ5 538 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 ZDHHC23Q8IYP9 409 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 PXT1Q8NFP0 134 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 HPSE2Q8WWQ2 592 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 LRRC46Q96FV0 321 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 RNF170Q96K19 258 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 USB1Q9BQ65 265 aaKnown RBP12.16□□□□□ -0.46
CUX1-209ENST00000487284 CACNG6Q9BXT2 260 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 OR51B6Q9H340 312 aa12.16□□□□□ -0.46
CUX1-209ENST00000487284 MOV10Q9HCE1 1003 aaKnown RBP12.16□□□□□ -0.46
CUX1-209ENST00000487284 ZNF107Q9UII5 783 aaPredicted RBP12.16□□□□□ -0.46
CUX1-209ENST00000487284 SOCS1O15524 211 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 THBDP07204 575 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 CECR9P0C854 216 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 RNF224P0DH78 156 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 GIFP27352 417 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 ZNF83P51522 516 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 BTG1P62324 171 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 PDZK1IP1Q13113 114 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 PCGF3Q3KNV8 242 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 CEACAM21Q3KPI0 293 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 TMEM255AQ5JRV8 349 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 ZSCAN4Q8NAM6 433 aaPredicted RBP12.15□□□□□ -0.46
CUX1-209ENST00000487284 CHST4Q8NCG5 386 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 OR10K1Q8NGX5 313 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 RAB3CQ96E17 227 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 WFIKKN1Q96NZ8 548 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 SELENOIQ9C0D9 397 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 FGF23Q9GZV9 251 aaPredicted RBP12.15□□□□□ -0.46
CUX1-209ENST00000487284 METTL9Q9H1A3 318 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 ZMAT3Q9HA38 289 aaKnown RBP12.15□□□□□ -0.46
CUX1-209ENST00000487284 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.15□□□□□ -0.46
CUX1-209ENST00000487284 NPDC1Q9NQX5 325 aaPredicted RBP12.15□□□□□ -0.46
CUX1-209ENST00000487284 ELF5Q9UKW6 265 aaPredicted RBP12.15□□□□□ -0.46
CUX1-209ENST00000487284 MPC1Q9Y5U8 109 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 NUBP2Q9Y5Y2 271 aa12.15□□□□□ -0.46
CUX1-209ENST00000487284 CADP27708 2225 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 IGHV1-18A0A0C4DH31 117 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 ANKRD30BLA7E2S9 258 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 MFNGO00587 321 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 SPRY1O43609 319 aaPredicted RBP12.14□□□□□ -0.47
CUX1-209ENST00000487284 ANGPTL7O43827 346 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 ZNF780AO75290 641 aaPredicted RBP12.14□□□□□ -0.47
CUX1-209ENST00000487284 TCRBP04435 133 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 PLA2G2AP14555 144 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 RAC2P15153 192 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 HIST1H1DP16402 221 aaKnown RBP12.14□□□□□ -0.47
CUX1-209ENST00000487284 CPT2P23786 658 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 FAUP35544 74 aaKnown RBP12.14□□□□□ -0.47
CUX1-209ENST00000487284 UCP2P55851 309 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 TMEM50BP56557 158 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 SORDQ00796 357 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 SRSF1Q07955 248 aaKnown RBP eCLIP12.14□□□□□ -0.47
CUX1-209ENST00000487284 RSU1Q15404 277 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 C11orf91Q3C1V1 193 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 PLAC9Q5JTB6 97 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 WFDC8Q8IUA0 241 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 OR5A2Q8NGI9 324 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 Q96M66 194 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 ELL3Q9HB65 397 aaPredicted RBP12.14□□□□□ -0.47
CUX1-209ENST00000487284 TENM4Q6N022 2769 aa12.14□□□□□ -0.47
CUX1-209ENST00000487284 IGKV1-12A0A0C4DH73 117 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 MEIS3P1A6NDR6 274 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 INMT-MINDY4F8WBC2 141 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 LILRA1O75019 489 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 PLATP00750 562 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 IGKV1D-12P01611 117 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 AKAIN1P0CW23 69 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 PPP3CBP16298 524 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 GNB3P16520 340 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 TUBG1P23258 451 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 CCR6P51684 374 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 PNLIPRP3Q17RR3 467 aa12.13□□□□□ -0.47
CUX1-209ENST00000487284 C3orf36Q3SXR2 165 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms