RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ZNF841Q6ZN19 808 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 ANGPTL5Q86XS5 388 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 EGFL6Q8IUX8 553 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 HAVCR2Q8TDQ0 301 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 PP6455Q8WZ26 134 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 C10orf35Q96D05 121 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 BORCS8Q96FH0 119 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 TMPRSS13Q9BYE2 586 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 SMURF1Q9HCE7 757 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 PLCXD1Q9NUJ7 323 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 DUX4Q9UBX2 424 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 ATRQ13535 2644 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 J3QLI3 93 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 SLC1A7O00341 560 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 TNFRSF13BO14836 293 aaPredicted RBP12.28□□□□□ -0.44
USP4-212ENST00000486549 MYL12BO14950 172 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 OCM2P0CE71 109 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 OCMP0CE72 109 aaPredicted RBP12.28□□□□□ -0.44
USP4-212ENST00000486549 GATA3P23771 443 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 C21orf33P30042 268 aaPredicted RBP12.28□□□□□ -0.44
USP4-212ENST00000486549 FUT6P51993 359 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 CDK5R1Q15078 307 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 C6orf141Q5SZD1 244 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 STUMQ69YW2 141 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 RPL22L1Q6P5R6 122 aaKnown RBP12.28□□□□□ -0.44
USP4-212ENST00000486549 CALHM1Q8IU99 346 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 FAM216BQ8N7L0 139 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 OR13C9Q8NGT0 318 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 ST8SIA4Q92187 359 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 TMIGD2Q96BF3 282 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 NLKQ9UBE8 527 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 DHDHQ9UQ10 334 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 POLR3KQ9Y2Y1 108 aaPredicted RBP12.28□□□□□ -0.44
USP4-212ENST00000486549 INSIG2Q9Y5U4 225 aa12.28□□□□□ -0.44
USP4-212ENST00000486549 MXRA5Q9NR99 2828 aa12.27□□□□□ -0.44
USP4-212ENST00000486549 IGKV1-27A0A075B6S5 117 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 PPIAL4CA0A0B4J2A2 164 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 IGHV2-70DA0A0C4DH43 119 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 NKX6-3A6NJ46 265 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 PTGES3LE9PB15 166 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 DVL1O14640 695 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 INMTO95050 263 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 LALBAP00709 142 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 ATF1P18846 271 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 MYF6P23409 242 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 AZGP1P25311 298 aaKnown RBP12.27□□□□□ -0.45
USP4-212ENST00000486549 GABRA2P47869 451 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 SOX2P48431 317 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 HSPA13P48723 471 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 NPY4RP50391 375 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 IKZF1Q13422 519 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 CCDC58Q4VC31 144 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 BTNL3Q6UXE8 466 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 C1orf229Q6ZS94 237 aaPredicted RBP12.27□□□□□ -0.45
USP4-212ENST00000486549 SLC36A1Q7Z2H8 476 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 FGFRL1Q8N441 504 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 ZFP41Q8N8Y5 198 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 POC1AQ8NBT0 407 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 OR52N1Q8NH53 320 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 C12orf43Q96C57 262 aaKnown RBP12.27□□□□□ -0.45
USP4-212ENST00000486549 NUDT16L1Q9BRJ7 211 aaKnown RBP12.27□□□□□ -0.45
USP4-212ENST00000486549 MRI1Q9BV20 369 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 ANKRD60Q9BZ19 345 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 BABAM2Q9NXR7 383 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 SCN3BQ9NY72 215 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 POLDIP2Q9Y2S7 368 aa12.27□□□□□ -0.45
USP4-212ENST00000486549 SIRT4Q9Y6E7 314 aaPredicted RBP12.27□□□□□ -0.45
USP4-212ENST00000486549 IGKV1-9A0A0C4DH69 117 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 PNMA8CA0A1B0GUJ8 204 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 OR2AT4A6NND4 320 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 C22orf46C9J442 243 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 FCN3O75636 299 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 NXPH2O95156 264 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 PGA5P0DJD9 388 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 SELLP14151 372 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 AMY2BP19961 511 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 POU3F4P49335 361 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 ATP1B3P54709 279 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 UTS2BQ765I0 119 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 RAB40AQ8WXH6 277 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 RGP1Q92546 391 aaPredicted RBP12.26□□□□□ -0.45
USP4-212ENST00000486549 SLAMF9Q96A28 289 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 CNBD2Q96M20 576 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 PKIBQ9C010 78 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 FKBP14Q9NWM8 211 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 KAAG1Q9UBP8 84 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 OPN4Q9UHM6 478 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 RRP15Q9Y3B9 282 aaKnown RBP12.26□□□□□ -0.45
USP4-212ENST00000486549 AUP1Q9Y679 476 aa12.26□□□□□ -0.45
USP4-212ENST00000486549 NDUFB3O43676 98 aa12.25□□□□□ -0.45
USP4-212ENST00000486549 ENSAO43768 121 aaKnown RBP12.25□□□□□ -0.45
USP4-212ENST00000486549 CDK1P06493 297 aa12.25□□□□□ -0.45
USP4-212ENST00000486549 RPSAP08865 295 aaKnown RBP12.25□□□□□ -0.45
USP4-212ENST00000486549 PSG2P11465 335 aa12.25□□□□□ -0.45
USP4-212ENST00000486549 PRKACBP22694 351 aa12.25□□□□□ -0.45
USP4-212ENST00000486549 MPZP25189 248 aa12.25□□□□□ -0.45
USP4-212ENST00000486549 VHLP40337 213 aa12.25□□□□□ -0.45
USP4-212ENST00000486549 RBP2P50120 134 aa12.25□□□□□ -0.45
USP4-212ENST00000486549 MTCP1P56278 107 aa12.25□□□□□ -0.45
USP4-212ENST00000486549 PAX2Q02962 417 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms