RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 GABRPO00591 440 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 OR7A17O14581 309 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 EEF1E1O43324 174 aaKnown RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 NME2P1O60361 137 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 GGCTO75223 188 aaKnown RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 RBBP9O75884 186 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 GUCA1CO95843 209 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 IGLV3-25P01717 112 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 RLN2P04090 185 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 ALDOBP05062 364 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 CD2P06729 351 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 TACSTD2P09758 323 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 LAMP1P11279 417 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 RPS2P15880 293 aaKnown RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 CELP19835 753 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 GDF1P27539 372 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 HTR1FP30939 366 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 GLP1RP43220 463 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 ZNF140P52738 457 aaPredicted RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 KRTAP12-2P59991 146 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 ERVK-25P63136 954 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 DCDP81605 110 aaKnown RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 SLC7A9P82251 487 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 IRF8Q02556 426 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 ST3GAL3Q11203 375 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 ECH1Q13011 328 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 TGIF1Q15583 401 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 XKR4Q5GH76 650 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 FAHD2BQ6P2I3 314 aaPredicted RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 SFXN4Q6P4A7 337 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 DRAM2Q6UX65 266 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 ALKAL1Q6UXT8 129 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 CLEC20AQ6ZU45 233 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 ACOT7LQ6ZUV0 252 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 VASH2Q86V25 355 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 MSRB3Q8IXL7 192 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 GTPBP8Q8N3Z3 284 aaPredicted RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 NPWQ8N729 165 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 OR11H7Q8NGC8 314 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 OR4K2Q8NGD2 314 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 OR52L1Q8NGH7 329 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 OR52I1Q8NGK6 324 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 FAM110BQ8TC76 370 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 RAET1EQ8TD07 263 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 ACOT11Q8WXI4 607 aaPredicted RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 TFGQ92734 400 aaPredicted RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 FAHD2AQ96GK7 314 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 CELF6Q96J87 481 aaKnown RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 EFCAB11Q9BUY7 163 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 SYT4Q9H2B2 425 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 NCOR1P1Q9H4R4 102 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 EXO5Q9H790 373 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 NMNAT1Q9HAN9 279 aaPredicted RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 MEPEQ9NQ76 525 aaPredicted RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 PRMT8Q9NR22 394 aaPredicted RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 SLC17A5Q9NRA2 495 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 MMP26Q9NRE1 261 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 TVP23BQ9NYZ1 205 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 P2RX2Q9UBL9 471 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 PRODH2Q9UF12 536 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 NEU3Q9UQ49 428 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 MEMO1Q9Y316 297 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 DOCK3Q8IZD9 2030 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 GNG14A0A1W2PPG7 69 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 C9JVG2 144 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 M0QZ92 97 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 RNF13O43567 381 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 TBX19O60806 448 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 CLDN11O75508 207 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 SCO1O75880 301 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 RCBTB2O95199 551 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 MPC2O95563 127 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 CPSF4O95639 269 aaKnown RBP4.26□□□□□ -1.73
USP40-213ENST00000483216 SERPINA5P05154 406 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 GP1BAP07359 652 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 HBQ1P09105 142 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 ANXA4P09525 319 aaPredicted RBP4.26□□□□□ -1.73
USP40-213ENST00000483216 RNH1P13489 461 aaKnown RBP4.26□□□□□ -1.73
USP40-213ENST00000483216 ZNF14P17017 642 aaPredicted RBP4.26□□□□□ -1.73
USP40-213ENST00000483216 SDC1P18827 310 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 ELK1P19419 428 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 ATP5A1P25705 553 aaKnown RBP4.26□□□□□ -1.73
USP40-213ENST00000483216 CD1CP29017 333 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 PTPN6P29350 595 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 OR1E1P30953 314 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 TGFBR1P36897 503 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 RABIFP47224 123 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 CNN1P51911 297 aaKnown RBP4.26□□□□□ -1.73
USP40-213ENST00000483216 CRISP3P54108 245 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 SLC26A5P58743 744 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 TAS2R60P59551 318 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 SPCS3P61009 180 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 UBE2MP61081 183 aaKnown RBP4.26□□□□□ -1.73
USP40-213ENST00000483216 CDK5Q00535 292 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 SEMG2Q02383 582 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 ZNF85Q03923 595 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 ZNF763Q0D2J5 394 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 TSPAN31Q12999 210 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 PDZK1IP1Q13113 114 aa4.26□□□□□ -1.73
USP40-213ENST00000483216 HFEQ30201 348 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms