RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 CALHM1Q8IU99 346 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 EGFL6Q8IUX8 553 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 C8orf59Q8N0T1 100 aaPredicted RBP12.92□□□□□ -0.34
HMGA1-206ENST00000478214 ZNF676Q8N7Q3 588 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 POC1AQ8NBT0 407 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 C22orf15Q8WYQ4 148 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 PP6455Q8WZ26 134 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 TMIGD2Q96BF3 282 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 FGGYQ96C11 551 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 C10orf35Q96D05 121 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 GAFA1Q96PS6 74 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 JAM3Q9BX67 310 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 VCXQ9H320 206 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 HHLA2Q9UM44 414 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 HSPE1-MOB4S4R3N1 261 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 IGKV1D-17A0A075B6S4 117 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 IGKV1-27A0A075B6S5 117 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 IGHV3OR16-10A0A075B7F0 116 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 SERPINA3P01011 423 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 PGA5P0DJD9 388 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 PSG2P11465 335 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 ZNF20P17024 532 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 MPZP25189 248 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 FUT6P51993 359 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 GTF2A1P52655 376 aaPredicted RBP12.91□□□□□ -0.34
HMGA1-206ENST00000478214 GBX2P52951 348 aaPredicted RBP12.91□□□□□ -0.34
HMGA1-206ENST00000478214 FGF12P61328 243 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 LAIR2Q6ISS4 152 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 ZNF788Q6ZQV5 615 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 BATF2Q8N1L9 274 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 NRG4Q8WWG1 115 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 UPRTQ96BW1 309 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 SLC6A7Q99884 636 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 DNTTIP1Q9H147 329 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 ZNF222Q9UK12 451 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 POLDIP2Q9Y2S7 368 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 DOCK11Q5JSL3 2073 aa12.91□□□□□ -0.34
HMGA1-206ENST00000478214 IGKV1-9A0A0C4DH69 117 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 IRGMA1A4Y4 181 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 NKX6-3A6NJ46 265 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 SIGLEC5O15389 551 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 NDUFB3O43676 98 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 NOS1APO75052 506 aaPredicted RBP12.9□□□□□ -0.34
HMGA1-206ENST00000478214 ZFPL1O95159 310 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 PPIAL4GP0DN37 164 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 IGHV4-38-2P0DP08 117 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 GABRA2P47869 451 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 MRPL28Q13084 256 aaKnown RBP12.9□□□□□ -0.34
HMGA1-206ENST00000478214 CNN3Q15417 329 aaKnown RBP12.9□□□□□ -0.34
HMGA1-206ENST00000478214 DGUOKQ16854 277 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 KRTAP24-1Q3LI83 254 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 OR2G6Q5TZ20 316 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 ACP7Q6ZNF0 438 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 OR13C3Q8NGS6 347 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 TMEM158Q8WZ71 300 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 TFAP2CQ92754 450 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 GGHQ92820 318 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 BORCS8Q96FH0 119 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 PDCD1LG2Q9BQ51 273 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 NRIP2Q9BQI9 281 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 PKIBQ9C010 78 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 RASL12Q9NYN1 266 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 ZNF69Q9UC07 566 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 CLEC2DQ9UHP7 191 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 RPUSD1Q9UJJ7 312 aaKnown RBP12.9□□□□□ -0.34
HMGA1-206ENST00000478214 NUP50Q9UKX7 468 aa12.9□□□□□ -0.34
HMGA1-206ENST00000478214 DIMT1Q9UNQ2 313 aaKnown RBP12.9□□□□□ -0.34
HMGA1-206ENST00000478214 CAB39Q9Y376 341 aaPredicted RBP12.9□□□□□ -0.34
HMGA1-206ENST00000478214 TMEM212A6NML5 194 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 ZNF879B4DU55 563 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 XPNPEP2O43895 674 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 VENTXO95231 258 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 ECDO95905 644 aaPredicted RBP12.89□□□□□ -0.35
HMGA1-206ENST00000478214 PLATP00750 562 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 LIPFP07098 398 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 SFTPBP07988 381 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 ACAA1P09110 424 aaPredicted RBP12.89□□□□□ -0.35
HMGA1-206ENST00000478214 CCDC159P0C7I6 412 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 ATF1P18846 271 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 IL13RA1P78552 427 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 IL24Q13007 206 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 SMIM21Q3B7S5 101 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 C11orf91Q3C1V1 193 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 LRRC10Q5BKY1 277 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 XAF1Q6GPH4 301 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 UTS2BQ765I0 119 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 BCL6BQ8N143 479 aaPredicted RBP12.89□□□□□ -0.35
HMGA1-206ENST00000478214 BPIFB2Q8N4F0 458 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 PNLDC1Q8NA58 520 aaKnown RBP12.89□□□□□ -0.35
HMGA1-206ENST00000478214 OR5AK2Q8NH90 309 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 ZNF418Q8TF45 676 aaPredicted RBP12.89□□□□□ -0.35
HMGA1-206ENST00000478214 FBLIM1Q8WUP2 373 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 TMEM80Q96HE8 168 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 MED30Q96HR3 178 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 EXOSC1Q9Y3B2 195 aaKnown RBP12.89□□□□□ -0.35
HMGA1-206ENST00000478214 MAB21L2Q9Y586 359 aa12.89□□□□□ -0.35
HMGA1-206ENST00000478214 TRAV40A0A0B4J280 105 aa12.88□□□□□ -0.35
HMGA1-206ENST00000478214 TRBV2A0A0J9YWF9 115 aa12.88□□□□□ -0.35
HMGA1-206ENST00000478214 RFPL4AA6NLU0 287 aa12.88□□□□□ -0.35
HMGA1-206ENST00000478214 RFPL4AL1F8VTS6 287 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms