RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 DEPPQ9NTK1 212 aa14.34□□□□□ -0.11
TMEM53-208ENST00000476724 PLEKHJ1Q9NW61 149 aa14.34□□□□□ -0.11
TMEM53-208ENST00000476724 EHFQ9NZC4 300 aa14.34□□□□□ -0.11
TMEM53-208ENST00000476724 MBD2Q9UBB5 411 aa14.34□□□□□ -0.11
TMEM53-208ENST00000476724 GLS2Q9UI32 602 aa14.34□□□□□ -0.11
TMEM53-208ENST00000476724 TIMM10BQ9Y5J6 103 aa14.34□□□□□ -0.11
TMEM53-208ENST00000476724 OR6C6A6NF89 314 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 LRRC3CA6NJW4 275 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 CXCL13O43927 109 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 TMEM225BP0DP42 221 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 CNR1P21554 472 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 ITGA3P26006 1051 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 LUMP51884 338 aaPredicted RBP14.33□□□□□ -0.12
TMEM53-208ENST00000476724 SPINK14Q6IE38 97 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 PLXDC2Q6UX71 529 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 GALNT11Q8NCW6 608 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 OR10D3Q8NH80 312 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 CPNE4Q96A23 557 aaPredicted RBP14.33□□□□□ -0.12
TMEM53-208ENST00000476724 ZNF775Q96BV0 537 aaPredicted RBP14.33□□□□□ -0.12
TMEM53-208ENST00000476724 Q96M66 194 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 LINC00052Q96N35 136 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 FOXB1Q99853 325 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 WDR13Q9H1Z4 485 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 ASCL3Q9NQ33 180 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 EDARQ9UNE0 448 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 SPEF1Q9Y4P9 236 aa14.33□□□□□ -0.12
TMEM53-208ENST00000476724 ZFHX4Q86UP3 3567 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 TM4SF5O14894 197 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 RRP8O43159 456 aaKnown RBP14.32□□□□□ -0.12
TMEM53-208ENST00000476724 TRAPPC6AO75865 159 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 SCO1O75880 301 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 CSTBP04080 98 aaKnown RBP14.32□□□□□ -0.12
TMEM53-208ENST00000476724 RFPL3SP0C7P2 107 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 SRSF6Q13247 344 aaKnown RBP14.32□□□□□ -0.12
TMEM53-208ENST00000476724 PAN3Q58A45 887 aaKnown RBP14.32□□□□□ -0.12
TMEM53-208ENST00000476724 DMRTC1Q5HYR2 192 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 ZNF774Q6NX45 483 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 LHFPL2Q6ZUX7 228 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 ZNF100Q8IYN0 542 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 DMRTA2Q96SC8 542 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 GPR173Q9NS66 373 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 HSF4Q9ULV5 492 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 MYO7BQ6PIF6 2116 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 PINLYPA6NC86 204 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 LCATP04180 440 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 SERPINA5P05154 406 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 ZNF32P17041 273 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 NTF4P34130 210 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 ATXN7L3Q14CW9 347 aaPredicted RBP14.32□□□□□ -0.12
TMEM53-208ENST00000476724 TUSC1Q2TAM9 212 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 WIPI1Q5MNZ9 446 aaPredicted RBP14.32□□□□□ -0.12
TMEM53-208ENST00000476724 ASCL4Q6XD76 172 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 ROBO4Q8WZ75 1007 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 C1QTNF6Q9BXI9 259 aa14.32□□□□□ -0.12
TMEM53-208ENST00000476724 TEX13DA0A0J9YY54 714 aaPredicted RBP14.31□□□□□ -0.12
TMEM53-208ENST00000476724 F5H0A9 414 aaPredicted RBP14.31□□□□□ -0.12
TMEM53-208ENST00000476724 CYTIPO60759 359 aa14.31□□□□□ -0.12
TMEM53-208ENST00000476724 ACKR3P25106 362 aa14.31□□□□□ -0.12
TMEM53-208ENST00000476724 RBP2P50120 134 aa14.31□□□□□ -0.12
TMEM53-208ENST00000476724 SUPT4H1P63272 117 aaKnown RBP14.31□□□□□ -0.12
TMEM53-208ENST00000476724 SNTB1Q13884 538 aaKnown RBP14.31□□□□□ -0.12
TMEM53-208ENST00000476724 RSU1Q15404 277 aa14.31□□□□□ -0.12
TMEM53-208ENST00000476724 NRN1LQ496H8 165 aa14.31□□□□□ -0.12
TMEM53-208ENST00000476724 ASCL5Q7RTU5 278 aa14.31□□□□□ -0.12
TMEM53-208ENST00000476724 VASH2Q86V25 355 aa14.31□□□□□ -0.12
TMEM53-208ENST00000476724 RELL2Q8NC24 303 aaPredicted RBP14.31□□□□□ -0.12
TMEM53-208ENST00000476724 SIGLEC12Q96PQ1 595 aa14.31□□□□□ -0.12
TMEM53-208ENST00000476724 SHARPINQ9H0F6 387 aa14.31□□□□□ -0.12
TMEM53-208ENST00000476724 LRFN1Q9P244 771 aa14.31□□□□□ -0.12
TMEM53-208ENST00000476724 BOKQ9UMX3 212 aaPredicted RBP14.31□□□□□ -0.12
TMEM53-208ENST00000476724 C14orf166Q9Y224 244 aaKnown RBP14.31□□□□□ -0.12
TMEM53-208ENST00000476724 CSAG2Q9Y5P2 127 aa14.31□□□□□ -0.12
TMEM53-208ENST00000476724 SDCBPO00560 298 aaPredicted RBP14.3□□□□□ -0.12
TMEM53-208ENST00000476724 LYL1P12980 280 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 GDF1P27539 372 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 NOVA1P51513 510 aaKnown RBP14.3□□□□□ -0.12
TMEM53-208ENST00000476724 PSG4Q00888 419 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 NAAAQ02083 359 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 SLC9A3R2Q15599 337 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 BEX5Q5H9J7 111 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 TMEM42Q69YG0 159 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 STOML3Q8TAV4 291 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 DCUN1D4Q92564 292 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 TMEM45BQ96B21 275 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 BORCS8Q96FH0 119 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 TECTBQ96PL2 329 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 RNF126Q9BV68 326 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 OR2H1Q9GZK4 316 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 ZNF701Q9NV72 531 aaPredicted RBP14.3□□□□□ -0.12
TMEM53-208ENST00000476724 F8VVB4 439 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 F8VWA3 439 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 NEURL1O76050 574 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 HTR3BO95264 441 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 B4GALT1P15291 398 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 GABRR1P24046 479 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 CD82P27701 267 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 HTR5AP47898 357 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 GFRA1P56159 465 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 CEACAM16Q2WEN9 425 aa14.3□□□□□ -0.12
TMEM53-208ENST00000476724 LINC00696Q6ZRV3 163 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms