RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ACP7Q6ZNF0 438 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 THAP5Q7Z6K1 395 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 SSMEM1Q8WWF3 244 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 RORBQ92753 470 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 EME1Q96AY2 570 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 CENPNQ96H22 339 aaPredicted RBP11.55□□□□□ -0.56
UPF3A-204ENST00000475218 MED30Q96HR3 178 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 AJUBAQ96IF1 538 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 ZNF696Q9H7X3 374 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 MOB1AQ9H8S9 216 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 WARS2Q9UGM6 360 aaKnown RBP11.55□□□□□ -0.56
UPF3A-204ENST00000475218 POMT1Q9Y6A1 747 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 SAC3D1A6NKF1 404 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 ZNF670-ZNF695F2Z2N8 137 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 H3BNX3 289 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 PGA5P0DJD9 388 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 FCGR1AP12314 374 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 GABRA2P47869 451 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 CEBPDP49716 269 aaPredicted RBP11.54□□□□□ -0.56
UPF3A-204ENST00000475218 ISL1P61371 349 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 BLMHQ13867 455 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 TAF9Q16594 264 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 CLVS2Q5SYC1 327 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 CATSPERDQ86XM0 798 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 CALHM1Q8IU99 346 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 WFDC12Q8WWY7 111 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 PYDC1Q8WXC3 89 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 NRIP2Q9BQI9 281 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 H2AFY2Q9P0M6 372 aaPredicted RBP11.54□□□□□ -0.56
UPF3A-204ENST00000475218 GTF2A1LQ9UNN4 478 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 SNX5Q9Y5X3 404 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 A0A1W2PRD5 423 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 A0A1W2PRF3 423 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 A0A1W2PRM7 423 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 J3QT63 122 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 DLGAP1O14490 977 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 GPR137BO60478 399 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 NOS1APO75052 506 aaPredicted RBP11.54□□□□□ -0.56
UPF3A-204ENST00000475218 RPP14O95059 124 aaKnown RBP11.54□□□□□ -0.56
UPF3A-204ENST00000475218 NDUFA7O95182 113 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 RPSAP08865 295 aaKnown RBP11.54□□□□□ -0.56
UPF3A-204ENST00000475218 NDUFB7P17568 137 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 MPZP25189 248 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 RAG2P55895 527 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 C1orf122Q6ZSJ8 110 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 BATF2Q8N1L9 274 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 PRSS35Q8N3Z0 413 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 C11orf42Q8N5U0 333 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 C17orf50Q8WW18 174 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 SLITRK2Q9H156 845 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 RIBC2Q9H4K1 309 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 HES4Q9HCC6 221 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 C19orf12Q9NSK7 152 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 ZNRD1Q9P1U0 126 aa11.54□□□□□ -0.56
UPF3A-204ENST00000475218 IGKV1-27A0A075B6S5 117 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 RFPL4AA6NLU0 287 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 RFPL4AL1F8VTS6 287 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 H3BSH0 61 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 NPFFO15130 113 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 OR2T7P0C7T2 308 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 HAAOP46952 286 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 ERVK11-1P61568 191 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 ZNF85Q03923 595 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 ANGPTL5Q86XS5 388 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 OR8J1Q8NGP2 316 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 OR2T27Q8NH04 317 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 ZNF671Q8TAW3 534 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 DCLRE1BQ9H816 532 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 RASL12Q9NYN1 266 aa11.53□□□□□ -0.56
UPF3A-204ENST00000475218 DHRS7CA6NNS2 312 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 F8VVB4 439 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 F8VWA3 439 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 J3QRE1 110 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 M0R1W7 72 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 ALPLP05186 524 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 SAA4P35542 130 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 KIR3DL2P43630 455 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 UBE2V2Q15819 145 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 ODF4Q2M2E3 257 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 CMTM4Q8IZR5 234 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 YIPF7Q8N8F6 280 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 TMEM185AQ8NFB2 350 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 TBC1D15Q8TC07 691 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 DYRK2Q92630 601 aa11.52□□□□□ -0.57
UPF3A-204ENST00000475218 MEGF11A6BM72 1044 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 METTL15A6NJ78 407 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 KRT8P05787 483 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 PRDX2P32119 198 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 ERVFRD-1P60508 538 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 ACTR3P61158 418 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 KPNB1Q14974 876 aaKnown RBP11.51□□□□□ -0.57
UPF3A-204ENST00000475218 ZNF573Q86YE8 665 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 OR10H4Q8NGA5 316 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 OR4F5Q8NH21 305 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 METTL8Q9H825 291 aaKnown RBP11.51□□□□□ -0.57
UPF3A-204ENST00000475218 ENOPH1Q9UHY7 261 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 A0A1W2PQ09 198 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 ANKRD61A6NGH8 418 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 WIPF1O43516 503 aa11.51□□□□□ -0.57
UPF3A-204ENST00000475218 SULT1C4O75897 302 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms