RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 SSX6Q7RTT6 188 aa13.34□□□□□ -0.27
COL9A3-208ENST00000469802 TMEM185AQ8NFB2 350 aa13.34□□□□□ -0.27
COL9A3-208ENST00000469802 OR14K1Q8NGZ2 314 aa13.34□□□□□ -0.27
COL9A3-208ENST00000469802 LRTOMTQ8WZ04 291 aa13.34□□□□□ -0.27
COL9A3-208ENST00000469802 IL4I1Q96RQ9 567 aa13.34□□□□□ -0.27
COL9A3-208ENST00000469802 CIB1Q99828 191 aa13.34□□□□□ -0.27
COL9A3-208ENST00000469802 DPAGT1Q9H3H5 408 aa13.34□□□□□ -0.27
COL9A3-208ENST00000469802 VPREB3Q9UKI3 123 aa13.34□□□□□ -0.27
COL9A3-208ENST00000469802 OR52A1Q9UKL2 312 aa13.34□□□□□ -0.27
COL9A3-208ENST00000469802 CAB39Q9Y376 341 aaPredicted RBP13.34□□□□□ -0.27
COL9A3-208ENST00000469802 FAM96BQ9Y3D0 163 aa13.34□□□□□ -0.27
COL9A3-208ENST00000469802 AP4S1Q9Y587 144 aa13.34□□□□□ -0.27
COL9A3-208ENST00000469802 A0A1W2PQ09 198 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 ZNF670-ZNF695F2Z2N8 137 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 J3QT63 122 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 SYNGR1O43759 233 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 NOS1APO75052 506 aaPredicted RBP13.33□□□□□ -0.28
COL9A3-208ENST00000469802 FCGR1AP12314 374 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 EEF1B2P24534 225 aaKnown RBP13.33□□□□□ -0.28
COL9A3-208ENST00000469802 MPZP25189 248 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 KRTAP10-3P60369 221 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 ACTR3P61158 418 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 OCLNQ16625 522 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 GDPGP1Q6ZNW5 385 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 C17orf107Q6ZR85 190 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 ZNF573Q86YE8 665 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 PNKDQ8N490 385 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 CD177Q8N6Q3 437 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 LINC01006Q8NI28 216 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 ZNF488Q96MN9 340 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 NRIP2Q9BQI9 281 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 GABARAPL3Q9BY60 117 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 HES4Q9HCC6 221 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 H2AFY2Q9P0M6 372 aaPredicted RBP13.33□□□□□ -0.28
COL9A3-208ENST00000469802 WARS2Q9UGM6 360 aaKnown RBP13.33□□□□□ -0.28
COL9A3-208ENST00000469802 SNX5Q9Y5X3 404 aa13.33□□□□□ -0.28
COL9A3-208ENST00000469802 CLPXO76031 633 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 HAAOP46952 286 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 RASSF2P50749 326 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 PROK1P58294 105 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 ACSM1Q08AH1 577 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 C1orf146Q5VVC0 180 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 AMIGO2Q86SJ2 522 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 ZSCAN4Q8NAM6 433 aaPredicted RBP13.32□□□□□ -0.28
COL9A3-208ENST00000469802 OR51G2Q8NGK0 314 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 GPR173Q9NS66 373 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 C19orf12Q9NSK7 152 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 GTF2A1LQ9UNN4 478 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 POLDIP2Q9Y2S7 368 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 RNF114Q9Y508 228 aa13.32□□□□□ -0.28
COL9A3-208ENST00000469802 A0A1W2PRD5 423 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 A0A1W2PRF3 423 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 A0A1W2PRM7 423 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 MEIOCA2RUB1 952 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 RFPL4AA6NLU0 287 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 RFPL4AL1F8VTS6 287 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 HTR1FP30939 366 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 POLR2IP36954 125 aaKnown RBP13.31□□□□□ -0.28
COL9A3-208ENST00000469802 ERVK11-1P61568 191 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 BRICD5Q6PL45 260 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 Q6ZSV7 163 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 CATSPERDQ86XM0 798 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 ZNF561Q8N587 486 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 BEND2Q8NDZ0 799 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 AJUBAQ96IF1 538 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 C16orf95Q9H693 158 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 OAZ3Q9UMX2 235 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 SLC22A13Q9Y226 551 aa13.31□□□□□ -0.28
COL9A3-208ENST00000469802 A0A1W2PQL4 384 aaPredicted RBP13.3□□□□□ -0.28
COL9A3-208ENST00000469802 ANKRD61A6NGH8 418 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 KCNAB3O43448 404 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 ATP5HO75947 161 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 KRT8P05787 483 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 OR2T7P0C7T2 308 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 CEBPDP49716 269 aaPredicted RBP13.3□□□□□ -0.28
COL9A3-208ENST00000469802 ISL1P61371 349 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 BLMHQ13867 455 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 MIDNQ504T8 468 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 CALHM1Q8IU99 346 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 FAM185AQ8N0U4 392 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 C11orf42Q8N5U0 333 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 OR5D13Q8NGL4 314 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 OR8J1Q8NGP2 316 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 OR2T27Q8NH04 317 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 OR5R1Q8NH85 324 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 CENPNQ96H22 339 aaPredicted RBP13.3□□□□□ -0.28
COL9A3-208ENST00000469802 TBX5Q99593 518 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 OSBPL10Q9BXB5 764 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 PKIBQ9C010 78 aa13.3□□□□□ -0.28
COL9A3-208ENST00000469802 BTBD17A6NE02 478 aa13.29□□□□□ -0.28
COL9A3-208ENST00000469802 A6NIN4 97 aa13.29□□□□□ -0.28
COL9A3-208ENST00000469802 SLC1A7O00341 560 aa13.29□□□□□ -0.28
COL9A3-208ENST00000469802 SULT1C4O75897 302 aa13.29□□□□□ -0.28
COL9A3-208ENST00000469802 TSPAN9O75954 239 aa13.29□□□□□ -0.28
COL9A3-208ENST00000469802 PAHP00439 452 aa13.29□□□□□ -0.28
COL9A3-208ENST00000469802 PRDX2P32119 198 aa13.29□□□□□ -0.28
COL9A3-208ENST00000469802 RPL31P62899 125 aaKnown RBP13.29□□□□□ -0.28
COL9A3-208ENST00000469802 IL24Q13007 206 aa13.29□□□□□ -0.28
COL9A3-208ENST00000469802 TMED1Q13445 227 aa13.29□□□□□ -0.28
COL9A3-208ENST00000469802 DHRS7BQ6IAN0 325 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms