RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 C5orf51A6NDU8 294 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 B8ZZF3 427 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 XRCC2O43543 280 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 MRPL33O75394 65 aaKnown RBP13.1□□□□□ -0.31
LDLR-202ENST00000455727 SERPINA5P05154 406 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 GABRR1P24046 479 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 SUPT4H1P63272 117 aaKnown RBP13.1□□□□□ -0.31
LDLR-202ENST00000455727 RPUSD3Q6P087 351 aaKnown RBP13.1□□□□□ -0.31
LDLR-202ENST00000455727 C6orf201Q7Z4U5 140 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 INO80EQ8NBZ0 244 aaPredicted RBP13.1□□□□□ -0.31
LDLR-202ENST00000455727 SPSB4Q96A44 273 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 MRPS24Q96EL2 167 aaKnown RBP13.1□□□□□ -0.31
LDLR-202ENST00000455727 MCTS1Q9ULC4 181 aaKnown RBP13.1□□□□□ -0.31
LDLR-202ENST00000455727 KMT2EQ8IZD2 1858 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 EEF1E1-BLOC1S5C9J1V9 151 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 SDCBPO00560 298 aaPredicted RBP13.09□□□□□ -0.31
LDLR-202ENST00000455727 CDX4O14627 284 aaPredicted RBP13.09□□□□□ -0.31
LDLR-202ENST00000455727 HTR3BO95264 441 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 FUT6P51993 359 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 DCAF10Q5QP82 559 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 TSPO2Q5TGU0 170 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 EIF4E3Q8N5X7 224 aaKnown RBP13.09□□□□□ -0.31
LDLR-202ENST00000455727 ZSCAN4Q8NAM6 433 aaPredicted RBP13.09□□□□□ -0.31
LDLR-202ENST00000455727 PXT1Q8NFP0 134 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 OR1S1Q8NH92 325 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 C1QTNF5Q9BXJ0 243 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 PRDM14Q9GZV8 571 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 IL36GQ9NZH8 169 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 KCNMB2Q9Y691 235 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 SESN1Q9Y6P5 492 aa13.09□□□□□ -0.31
LDLR-202ENST00000455727 RPL36A-HNRNPH2H7BZ11 118 aa13.08□□□□□ -0.31
LDLR-202ENST00000455727 CLDN18P56856 261 aa13.08□□□□□ -0.31
LDLR-202ENST00000455727 IP6K3Q96PC2 410 aa13.08□□□□□ -0.31
LDLR-202ENST00000455727 WDR13Q9H1Z4 485 aa13.08□□□□□ -0.31
LDLR-202ENST00000455727 DECR2Q9NUI1 292 aa13.08□□□□□ -0.31
LDLR-202ENST00000455727 RASL12Q9NYN1 266 aa13.08□□□□□ -0.31
LDLR-202ENST00000455727 C13orf42A0A1B0GVH6 325 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 A0A1B0GW55 424 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 A8MXK9 166 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 ANGPTL7O43827 346 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 MT-CO3P00414 261 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 DUX4L2P0CJ85 424 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 DUX4L3P0CJ86 424 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 DUX4L4P0CJ87 422 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 DUX4L5P0CJ88 424 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 DUX4L6P0CJ89 424 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 DUX4L7P0CJ90 424 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 RPS2P15880 293 aaKnown RBP13.08□□□□□ -0.32
LDLR-202ENST00000455727 ZNF708P17019 499 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 ZP3P21754 424 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 DTYMKP23919 212 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 ZNF92Q03936 586 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 BAMBIQ13145 260 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 OR1C1Q15619 314 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 PLEKHN1Q494U1 663 aaPredicted RBP13.08□□□□□ -0.32
LDLR-202ENST00000455727 COLCA1Q6ZS62 124 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 HSD17B13Q7Z5P4 300 aaPredicted RBP13.08□□□□□ -0.32
LDLR-202ENST00000455727 POM121Q96HA1 1249 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 RNF122Q9H9V4 155 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 PCDHB16Q9NRJ7 776 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 ZNF701Q9NV72 531 aaPredicted RBP13.08□□□□□ -0.32
LDLR-202ENST00000455727 MBD2Q9UBB5 411 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 DUX4Q9UBX2 424 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 SLC7A11Q9UPY5 501 aa13.08□□□□□ -0.32
LDLR-202ENST00000455727 POM121CA8CG34 1229 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 SPRY1O43609 319 aaPredicted RBP13.07□□□□□ -0.32
LDLR-202ENST00000455727 GLRA1P23415 457 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 AIMP2Q13155 320 aaKnown RBP13.07□□□□□ -0.32
LDLR-202ENST00000455727 PABPC1L2AQ5JQF8 200 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 SLC38A6Q8IZM9 456 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 MAFIPQ8WZ33 124 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 DMRTA2Q96SC8 542 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 ANXA10Q9UJ72 324 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 WDFY4Q6ZS81 3184 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 IGKV1D-8A0A087WSZ0 117 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 ZNF816-ZNF321PA0A0X1KG74 233 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 LOC105371267A0A1B0GV96 52 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 KRBOX1C9JBD0 128 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 FGF2P09038 288 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 LYL1P12980 280 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 PI3P19957 117 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 CHATP28329 748 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 SLC9A3R2Q15599 337 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 TAF9Q16594 264 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 SMUG1Q53HV7 270 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 NKAPLQ5M9Q1 402 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.07□□□□□ -0.32
LDLR-202ENST00000455727 CPEB3Q8NE35 698 aaKnown RBP13.07□□□□□ -0.32
LDLR-202ENST00000455727 CCDC120Q96HB5 630 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 RNF126Q9BV68 326 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 TTTY12Q9BZ98 90 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 SLC7A10Q9NS82 523 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 SPEF1Q9Y4P9 236 aa13.07□□□□□ -0.32
LDLR-202ENST00000455727 AHCTF1Q8WYP5 2266 aa13.06□□□□□ -0.32
LDLR-202ENST00000455727 CDK2AP1O14519 115 aa13.06□□□□□ -0.32
LDLR-202ENST00000455727 SYNGR4O95473 234 aa13.06□□□□□ -0.32
LDLR-202ENST00000455727 CELA3AP09093 270 aa13.06□□□□□ -0.32
LDLR-202ENST00000455727 EDN3P14138 238 aa13.06□□□□□ -0.32
LDLR-202ENST00000455727 ITGA3P26006 1051 aa13.06□□□□□ -0.32
LDLR-202ENST00000455727 PDZK1IP1Q13113 114 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms