RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 DIRC2Q96SL1 478 aa16.93■□□□□ 0.3
HMGA1-205ENST00000447654 CAPN10Q9HC96 672 aa16.93■□□□□ 0.3
HMGA1-205ENST00000447654 DNAJB12Q9NXW2 375 aaKnown RBP16.93■□□□□ 0.3
HMGA1-205ENST00000447654 B3GALT5Q9Y2C3 310 aa16.93■□□□□ 0.3
HMGA1-205ENST00000447654 ETV2O00321 342 aaPredicted RBP16.92■□□□□ 0.3
HMGA1-205ENST00000447654 C1QL1O75973 258 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 FUT3P21217 361 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 PCK2Q16822 640 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 C1orf189Q5VU69 101 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 TMEM92Q6UXU6 159 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 FAM185AQ8N0U4 392 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 CSNK1A1LQ8N752 337 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 CYB561D1Q8N8Q1 229 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 LRRC75AQ8NAA5 344 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 SLC24A4Q8NFF2 622 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 BMFQ96LC9 184 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 FAAP24Q9BTP7 215 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 CABLES2Q9BTV7 478 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 P4HTMQ9NXG6 502 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 HHLA2Q9UM44 414 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 A6NNC1 897 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 K7EP13 123 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 RENP00797 406 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 HBE1P02100 147 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 GPR3P46089 330 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 COL10A1Q03692 680 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 FZD2Q14332 565 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 FAM189A2Q15884 450 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 COL5A1-AS1Q5SY13 56 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 CATSPERDQ86XM0 798 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 SHISA5Q8N114 240 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 CPEB3Q8NE35 698 aaKnown RBP16.92■□□□□ 0.3
HMGA1-205ENST00000447654 OR4D6Q8NGJ1 314 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 OR5H2Q8NGV7 314 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 TSSK2Q96PF2 358 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 MSL2Q9HCI7 577 aa16.92■□□□□ 0.3
HMGA1-205ENST00000447654 NPIPA5A0A0B4J1W7 369 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 FAM230AA0A1W2PPH8 454 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 NPIPA7E9PJI5 369 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 H3BSH0 61 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 NPIPA8P0DM63 369 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 HSD11B1P28845 292 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 RPL29P47914 159 aaKnown RBP16.91■□□□□ 0.3
HMGA1-205ENST00000447654 TNFSF10P50591 281 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 IL13RA2Q14627 380 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 KCNMB1Q16558 191 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 TMEM182Q6ZP80 229 aaPredicted RBP16.91■□□□□ 0.3
HMGA1-205ENST00000447654 NKD1Q969G9 470 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 MIEN1Q9BRT3 115 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 FBXO34Q9NWN3 711 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 FKBP11Q9NYL4 201 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 APOBEC3BQ9UH17 382 aaKnown RBP16.91■□□□□ 0.3
HMGA1-205ENST00000447654 POLR3KQ9Y2Y1 108 aaPredicted RBP16.91■□□□□ 0.3
HMGA1-205ENST00000447654 LSM5Q9Y4Y9 91 aaKnown RBP16.91■□□□□ 0.3
HMGA1-205ENST00000447654 ISG15P05161 165 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 GRK6P43250 576 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 DPPA3Q6W0C5 159 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 MRPL41Q8IXM3 137 aaKnown RBP16.91■□□□□ 0.3
HMGA1-205ENST00000447654 ZCCHC10Q8TBK6 192 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 SH3BGRL3Q9H299 93 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 SRA1Q9HD15 236 aaKnown RBP16.91■□□□□ 0.3
HMGA1-205ENST00000447654 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.91■□□□□ 0.3
HMGA1-205ENST00000447654 PRR13Q9NZ81 148 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 C14orf166Q9Y224 244 aaKnown RBP16.91■□□□□ 0.3
HMGA1-205ENST00000447654 SLC22A13Q9Y226 551 aa16.91■□□□□ 0.3
HMGA1-205ENST00000447654 ZNF860A6NHJ4 632 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 GNB3P16520 340 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 TAS2R46P59540 309 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 UNC119Q13432 240 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 TRA2AQ13595 282 aaKnown RBP eCLIP16.9■□□□□ 0.3
HMGA1-205ENST00000447654 ZNF266Q14584 549 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 RAB30Q15771 203 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 MEP1BQ16820 701 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 ACOT6Q3I5F7 207 aaPredicted RBP16.9■□□□□ 0.3
HMGA1-205ENST00000447654 LEMD1Q68G75 181 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 KCTD18Q6PI47 426 aaPredicted RBP16.9■□□□□ 0.3
HMGA1-205ENST00000447654 CHRDL2Q6WN34 429 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 SSX7Q7RTT5 188 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 SFTPA2Q8IWL1 248 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 TMEM170AQ8WVE7 144 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 FAM122AQ96E09 287 aa16.9■□□□□ 0.3
HMGA1-205ENST00000447654 CDC14CA4D256 554 aa16.89■□□□□ 0.3
HMGA1-205ENST00000447654 TCF21O43680 179 aa16.89■□□□□ 0.3
HMGA1-205ENST00000447654 IRF2P14316 349 aa16.89■□□□□ 0.3
HMGA1-205ENST00000447654 BCKDHBP21953 392 aa16.89■□□□□ 0.3
HMGA1-205ENST00000447654 SLC18B1Q6NT16 456 aa16.89■□□□□ 0.3
HMGA1-205ENST00000447654 ZNF705AQ6ZN79 300 aaPredicted RBP16.89■□□□□ 0.3
HMGA1-205ENST00000447654 LSRQ86X29 649 aaPredicted RBP16.89■□□□□ 0.3
HMGA1-205ENST00000447654 COL26A1Q96A83 441 aa16.89■□□□□ 0.3
HMGA1-205ENST00000447654 LIPGQ9Y5X9 500 aa16.89■□□□□ 0.3
HMGA1-205ENST00000447654 SELENOTP62341 195 aa16.89■□□□□ 0.29
HMGA1-205ENST00000447654 CCL20P78556 96 aa16.89■□□□□ 0.29
HMGA1-205ENST00000447654 PLXDC2Q6UX71 529 aa16.89■□□□□ 0.29
HMGA1-205ENST00000447654 NUFIP2Q7Z417 695 aaKnown RBP16.89■□□□□ 0.29
HMGA1-205ENST00000447654 MAML2Q8IZL2 1156 aaPredicted RBP16.89■□□□□ 0.29
HMGA1-205ENST00000447654 OR1N1Q8NGS0 311 aa16.89■□□□□ 0.29
HMGA1-205ENST00000447654 OR13G1Q8NGZ3 307 aa16.89■□□□□ 0.29
HMGA1-205ENST00000447654 THOC3Q96J01 351 aaKnown RBP16.89■□□□□ 0.29
HMGA1-205ENST00000447654 DNAJC4Q9NNZ3 241 aa16.89■□□□□ 0.29
HMGA1-205ENST00000447654 NAGKQ9UJ70 344 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms