RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 CACNA1DQ01668 2161 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 IGKV1D-42A0A075B6H8 117 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 THY1P04216 161 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 RAB5BP61020 215 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 BAXQ07812 192 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 ZNF79Q15937 498 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 TSPO2Q5TGU0 170 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 PRAMEF5Q5TYX0 476 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 PRAMEF6Q5VXH4 476 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 ACOT7LQ6ZUV0 252 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 NLRC3Q7RTR2 1065 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 PXT1Q8NFP0 134 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 OR8U1Q8NH10 309 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 TTTY12Q9BZ98 90 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 GPR35Q9HC97 309 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 SHOXO15266 292 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 SEMA7AO75326 666 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 AADACP22760 399 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 CDH26Q8IXH8 852 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 RFESDQ8TAC1 157 aa10.85□□□□□ -0.67
TCOF1-205ENST00000439160 RIMS4Q9H426 269 aaPredicted RBP10.85□□□□□ -0.67
TCOF1-205ENST00000439160 ZNF646O15015 1829 aaPredicted RBP10.85□□□□□ -0.67
TCOF1-205ENST00000439160 GPR12P47775 334 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 TOR2AQ5JU69 321 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 RELL2Q8NC24 303 aaPredicted RBP10.84□□□□□ -0.67
TCOF1-205ENST00000439160 MARVELD1Q9BSK0 173 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 KRBOX1C9JBD0 128 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 SOCS1O15524 211 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 ACTL6AO96019 429 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 TMIGD3P0DMS9 266 aaPredicted RBP10.84□□□□□ -0.67
TCOF1-205ENST00000439160 PMP22Q01453 160 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 HIKESHIQ53FT3 197 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 SCARB1Q8WTV0 552 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 ADAT3Q96EY9 351 aaPredicted RBP10.84□□□□□ -0.67
TCOF1-205ENST00000439160 TAF9BQ9HBM6 251 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 SCGB2A1O75556 95 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 IFI6P09912 130 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 KITLGP21583 273 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 GSK3AP49840 483 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 SCAND1P57086 179 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 SPANXN5Q5MJ07 72 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 FAM185AQ8N0U4 392 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 FAM58AQ8N1B3 248 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 MUC20Q8N307 709 aaPredicted RBP10.84□□□□□ -0.67
TCOF1-205ENST00000439160 APCDD1LQ8NCL9 501 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 MSI2Q96DH6 328 aaKnown RBP10.84□□□□□ -0.67
TCOF1-205ENST00000439160 ANGPTL4Q9BY76 406 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 HIPK2Q9H2X6 1198 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 TMEM38BQ9NVV0 291 aa10.84□□□□□ -0.67
TCOF1-205ENST00000439160 hCG_1809904A0A1W2PP81 198 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 A0A1W2PPE2 198 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 A0A1W2PR64 198 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 A0A1W2PRV1 198 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 ZNHIT1O43257 154 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 OR2F2O95006 317 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 SLC6A1P30531 599 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 DHRS2Q13268 280 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 OR2F1Q13607 317 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 TCTE3Q8IZS6 198 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 LGALS8O00214 317 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 CYC1P08574 325 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 KIR3DL2P43630 455 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 PPP1CBP62140 327 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 PCOLCEQ15113 449 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 CST9LP1Q5W188 147 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 ZNF574Q6ZN55 896 aaPredicted RBP10.83□□□□□ -0.68
TCOF1-205ENST00000439160 C1orf87Q8N0U7 546 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 TMEM251Q8N6I4 163 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 CPEB3Q8NE35 698 aaKnown RBP10.83□□□□□ -0.68
TCOF1-205ENST00000439160 GPX7Q96SL4 187 aaPredicted RBP10.83□□□□□ -0.68
TCOF1-205ENST00000439160 OR2H1Q9GZK4 316 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 ESRP2Q9H6T0 727 aaKnown RBP10.83□□□□□ -0.68
TCOF1-205ENST00000439160 LRP5LA4QPB2 252 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 PLA2G10O15496 165 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 SSSCA1O60232 199 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 EFNB2P52799 333 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 PPP1R1AQ13522 171 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 GGTLC2Q14390 218 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 HES1Q14469 280 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 ATP1A1-AS1Q5TC04 95 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 KCNRGQ8N5I3 272 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 PUS1Q9Y606 427 aaKnown RBP eCLIP10.83□□□□□ -0.68
TCOF1-205ENST00000439160 PDCD6O75340 191 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 CST2P09228 141 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 COX6A1P12074 109 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 LGALS4P56470 323 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 OR13G1Q8NGZ3 307 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 PRRX2Q99811 253 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 HES7Q9BYE0 225 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 SLC39A9Q9NUM3 307 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 NEUROG3Q9Y4Z2 214 aa10.83□□□□□ -0.68
TCOF1-205ENST00000439160 ANKRD20A5PA0PJZ0 165 aa10.82□□□□□ -0.68
TCOF1-205ENST00000439160 LANCL1O43813 399 aa10.82□□□□□ -0.68
TCOF1-205ENST00000439160 TXNDC12O95881 172 aa10.82□□□□□ -0.68
TCOF1-205ENST00000439160 TTRP02766 147 aa10.82□□□□□ -0.68
TCOF1-205ENST00000439160 IL5P05113 134 aa10.82□□□□□ -0.68
TCOF1-205ENST00000439160 RPL12P30050 165 aaKnown RBP10.82□□□□□ -0.68
TCOF1-205ENST00000439160 EGR4Q05215 589 aa10.82□□□□□ -0.68
TCOF1-205ENST00000439160 ZP4Q12836 540 aa10.82□□□□□ -0.68
TCOF1-205ENST00000439160 ZNF658BQ4V348 819 aaPredicted RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms