RNA–Protein interactions for RNA: ENST00000425443.6

COL12A1-205, Transcript of collagen type XII alpha 1 chain, human

TSL 5

Gene COL12A1, Length 3,135 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COL12A1-205	ENST00000425443	TMEM230	Q96A57	120 aa		11.42	□□□□□ -0.58
COL12A1-205	ENST00000425443	MARS2	Q96GW9	593 aa	Known RBP	11.42	□□□□□ -0.58
COL12A1-205	ENST00000425443	PHB2	Q99623	299 aa		11.42	□□□□□ -0.58
COL12A1-205	ENST00000425443	GGACT	Q9BVM4	153 aa		11.42	□□□□□ -0.58
COL12A1-205	ENST00000425443	SLC26A1	Q9H2B4	701 aa		11.42	□□□□□ -0.58
COL12A1-205	ENST00000425443	OR2S2	Q9NQN1	319 aa		11.42	□□□□□ -0.58
COL12A1-205	ENST00000425443	GOLT1B	Q9Y3E0	138 aa		11.42	□□□□□ -0.58
COL12A1-205	ENST00000425443	ADAMTS20	P59510	1910 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443		A0A0B4J2A0	478 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	RAB6A	P20340	208 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	RAB2A	P61019	212 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	MICB	Q29980	383 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443		Q7L0L9	218 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	DCUN1D4	Q92564	292 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	CYTL1	Q9NRR1	136 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	GSKIP	Q9P0R6	139 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	SHPK	Q9UHJ6	478 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	MRPS28	Q9Y2Q9	187 aa	Known RBP	11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	ZNF205	O95201	554 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	CSNK1A1	P48729	337 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	MEF2D	Q14814	521 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	LPCAT3	Q6P1A2	487 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	ZNF561	Q8N587	486 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	RXFP4	Q8TDU9	374 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	PIK3IP1	Q96FE7	263 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	PGAM5	Q96HS1	289 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	TSNAX	Q99598	290 aa	Known RBP	11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	RBM24	Q9BX46	236 aa	Known RBP	11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	MOB1A	Q9H8S9	216 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	EML6	Q6ZMW3	1958 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	KNTC1	P50748	2209 aa		11.41	□□□□□ -0.58
COL12A1-205	ENST00000425443	IGLV3-32	A0A0A0MS00	114 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443		E9PLN8	166 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	ETV2	O00321	342 aa	Predicted RBP	11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	CRH	P06850	196 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	PCOLCE	Q15113	449 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	CLEC9A	Q6UXN8	241 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	MEX3B	Q6ZN04	569 aa	Known RBP	11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	DTX1	Q86Y01	620 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	UBALD2	Q8IYN6	164 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	OR8B12	Q8NGG6	310 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	OR4A4P	Q8NGN8	299 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	PTX4	Q96A99	478 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	C1orf147	Q96MC9	270 aa	Predicted RBP	11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	CDX2	Q99626	313 aa	Predicted RBP	11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	NSG1	A0A0A6YYJ2	146 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	TMEM218	A2RU14	115 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	AQP7P3	A6NL99	342 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	LAMTOR5	O43504	91 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	SNRPC	P09234	159 aa	Known RBP	11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	NPS	P0C0P6	89 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	FGF5	P12034	268 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	SSR4	P51571	173 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	RAB5B	P61020	215 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	NUTF2	P61970	127 aa	Known RBP	11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	CLN3	Q13286	438 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	TMEM17	Q86X19	198 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	ZDHHC22	Q8N966	263 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	TMED6	Q8WW62	240 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	RAB3C	Q96E17	227 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	LPAR5	Q9H1C0	372 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	C5orf66	Q9H5L9	145 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	WDR54	Q9H977	334 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	ZNF160	Q9HCG1	818 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	OR5AC2	Q9NZP5	309 aa		11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	ZNF107	Q9UII5	783 aa	Predicted RBP	11.4	□□□□□ -0.58
COL12A1-205	ENST00000425443	KNG1	P01042	644 aa		11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	CCL3	P10147	92 aa		11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	MPZ	P25189	248 aa		11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	FKBP2	P26885	142 aa	Known RBP	11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	ADH6	P28332	368 aa		11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	DUSP3	P51452	185 aa	Predicted RBP	11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	EXT1	Q16394	746 aa		11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	SLC25A47	Q6Q0C1	308 aa		11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	ADPRHL1	Q8NDY3	354 aa		11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	OR10R2	Q8NGX6	335 aa		11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	ARHGAP5-AS1	Q96IT6	56 aa		11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	RSRP1	Q9BUV0	290 aa		11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	SEBOX	Q9HB31	216 aa	Predicted RBP	11.4	□□□□□ -0.59
COL12A1-205	ENST00000425443	FGF16	O43320	207 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	PDGFB	P01127	241 aa	Predicted RBP	11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	NQO2	P16083	231 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	ZNF17	P17021	662 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	SERPINA2	P20848	420 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	PPT1	P50897	306 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	TMEM50B	P56557	158 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	HOGA1	Q86XE5	327 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	RNF138	Q8WVD3	245 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	TCEAL7	Q9BRU2	100 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	TLNRD1	Q9H1K6	362 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	ACKR4	Q9NPB9	350 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	ZNF701	Q9NV72	531 aa	Predicted RBP	11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	ADAMTS9	Q9P2N4	1935 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	IGHV1-45	A0A0A0MS14	117 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	TMEM14DP	A8MWL7	114 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	HSPA12A	O43301	675 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	SCGN	O76038	276 aa		11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	DUS4L	O95620	317 aa	Known RBP	11.39	□□□□□ -0.59
COL12A1-205	ENST00000425443	PSMB6	P28072	239 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms