RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 GRXCR1A8MXD5 290 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 HSD11B2P80365 405 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.05□□□□□ -1.92
SYNE1-212ENST00000423061 DEFB128Q7Z7B8 93 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 SAXO1Q8IYX7 474 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 LRP12Q9Y561 859 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 KIF26BQ2KJY2 2108 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 PDX1P52945 283 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 C20orf196Q8IYI0 205 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 GPR32P1Q8NGA4 272 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 ADAM29Q9UKF5 820 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 M0R2Z0 102 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 HPNP05981 417 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 ZNF157P51786 506 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-212ENST00000423061 SLC24A5Q71RS6 500 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 GLYATL1Q969I3 302 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 KCNIP1Q9NZI2 227 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 HLA-GP17693 338 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 SYPL1Q16563 259 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 TSEN54Q7Z6J9 526 aaKnown RBP3.05□□□□□ -1.92
SYNE1-212ENST00000423061 RNF122Q9H9V4 155 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 CENPMQ9NSP4 180 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 UBE2J1Q9Y385 318 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-212ENST00000423061 GNB3P16520 340 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 CCNOP22674 350 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 SLC7A9P82251 487 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 SIRT6Q8N6T7 355 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 OR1B1Q8NGR6 318 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 CPT1CQ8TCG5 803 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 PARP11Q9NR21 331 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 SERTAD4Q9NUC0 356 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 CBLCQ9ULV8 474 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 GLI3P10071 1580 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 B4DGG1 531 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 DUS4LO95620 317 aaKnown RBP3.05□□□□□ -1.92
SYNE1-212ENST00000423061 RELBQ01201 579 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 SMIM20Q8N5G0 67 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 ALG12Q9BV10 488 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 YIPF1Q9Y548 306 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 GCM2O75603 506 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-212ENST00000423061 RND3P61587 244 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 TIAL1Q01085 375 aaKnown RBP eCLIP3.05□□□□□ -1.92
SYNE1-212ENST00000423061 DECR1Q16698 335 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 Q6ZVU0 165 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 WNT10AQ9GZT5 417 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 ELOVL3Q9HB03 270 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 EHFQ9NZC4 300 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 ETV7Q9Y603 341 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 TAF1LQ8IZX4 1826 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 SP6Q3SY56 376 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 C10orf91Q5T1B1 145 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 CLEC4EQ9ULY5 219 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 IL6RP08887 468 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-212ENST00000423061 KITLGP21583 273 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 ELAVL4P26378 380 aaKnown RBP3.05□□□□□ -1.92
SYNE1-212ENST00000423061 EFNB2P52799 333 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 ACOT4Q8N9L9 421 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 ANAPC16Q96DE5 110 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 TMEM19Q96HH6 336 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 OR2D2Q9H210 308 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 LIPGQ9Y5X9 500 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 RNASET2O00584 256 aaKnown RBP3.05□□□□□ -1.92
SYNE1-212ENST00000423061 CHRM2P08172 466 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 Q6ZWC4 215 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 C5orf17Q8NAS9 161 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 GEMIN7Q9H840 131 aaKnown RBP3.05□□□□□ -1.92
SYNE1-212ENST00000423061 PPIL1Q9Y3C6 166 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 LY75O60449 1722 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 CLDN1O95832 211 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 ADRA2CP18825 462 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 MCHR1Q99705 422 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 ZBP1Q9H171 429 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 HIF1ANQ9NWT6 349 aa3.05□□□□□ -1.92
SYNE1-212ENST00000423061 AHDC1Q5TGY3 1603 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-212ENST00000423061 ZNF154Q13106 437 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 TMEM240Q5SV17 173 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ZC2HC1AQ96GY0 325 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ANAPC13Q9BS18 74 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 EIF4EBP3O60516 100 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 TMEM256Q8N2U0 113 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 MBNL3Q9NUK0 354 aaKnown RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 CLDN18P56856 261 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 RAB32Q13637 225 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ZNF385BQ569K4 471 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ENTPD8Q5MY95 495 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ABHD14AQ9BUJ0 271 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 TXNRD2Q9NNW7 524 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 HINT3Q9NQE9 182 aaKnown RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 OR10P1Q8NGE3 313 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 Q9N2J8 555 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 APOBEC3BQ9UH17 382 aaKnown RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ADAMTSL1Q8N6G6 1762 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 RALGAPA2Q2PPJ7 1873 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 TAPBPO15533 448 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 CD96P40200 585 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 UMODL1-AS1Q8N2C9 162 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 CYTL1Q9NRR1 136 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 C1orf123Q9NWV4 160 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ZNF43P17038 809 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms