RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MIR7-3HGQ8N6C7 128 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 OR6N2Q8NGY6 317 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 ZNF420Q8TAQ5 688 aaPredicted RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 ZFAND1Q8TCF1 268 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 MRPL48Q96GC5 212 aaKnown RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 TBL1XR1Q9BZK7 514 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 DHX35Q9H5Z1 703 aaKnown RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 LINC00574Q9H8X3 128 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 VCX3AQ9NNX9 186 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 MARCOQ9UEW3 520 aaPredicted RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 RAB22AQ9UL26 194 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 SLC7A11Q9UPY5 501 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 STK38LQ9Y2H1 464 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 GPR179Q6PRD1 2367 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 SIGLEC1Q9BZZ2 1709 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 BAZ2AQ9UIF9 1905 aaKnown RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 TMEM131Q92545 1883 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 SCN4AP35499 1836 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 A0A0G2JMP0 313 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 A0A0X1KG70 313 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 ZNF98A6NK75 572 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 A8MWL6 223 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 PRMT5O14744 637 aaPredicted RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 RNF113AO15541 343 aaKnown RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 GATCO43716 136 aaKnown RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 DHRS3O75911 302 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 LHBP01229 141 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 IGKV1D-16P01601 117 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 TPM1P09493 284 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 NELFEP18615 380 aaKnown RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 PSMB2P49721 201 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 RGS6P49758 472 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 ERFP50548 548 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 TNNC1P63316 161 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 PMVKQ15126 192 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 SP6Q3SY56 376 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 KRTAP13-2Q52LG2 175 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 MED27Q6P2C8 311 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 PRSS54Q6PEW0 395 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 SETD3Q86TU7 594 aaPredicted RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 KRTAP13-1Q8IUC0 172 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 CA13Q8N1Q1 262 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 LYPD1Q8N2G4 141 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 ATPAF2Q8N5M1 289 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 OR2M7Q8NG81 312 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 LRRC20Q8TCA0 184 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 CDKL2Q92772 493 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 CIDECQ96AQ7 238 aaPredicted RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 ADTRPQ96IZ2 230 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 METTL26Q96S19 204 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 TMED9Q9BVK6 235 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 COA1Q9GZY4 146 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 SYT4Q9H2B2 425 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 DDIT4Q9NX09 232 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 RWDD2AQ9UIY3 292 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 ZNF229Q9UJW7 825 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 TFR2Q9UP52 801 aa1.12□□□□□ -2.23
VPS13A-206ENST00000376646 RBMX2Q9Y388 322 aaKnown RBP1.12□□□□□ -2.23
VPS13A-206ENST00000376646 SETD1AO15047 1707 aaKnown RBP1.11□□□□□ -2.23
VPS13A-206ENST00000376646 TMEM72A0PK05 275 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 RAB19A4D1S5 217 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 PRAMEF26H0Y7S4 382 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 M0R1B8 84 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 PSMD11O00231 422 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 SPOPO43791 374 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 CNMDO75829 334 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 VAPBO95292 243 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 SEC11BP0C7V7 166 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 CELP19835 753 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 CCNOP22674 350 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 P2RY2P41231 377 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 GDI2P50395 445 aaKnown RBP1.11□□□□□ -2.23
VPS13A-206ENST00000376646 RBX1P62877 108 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 BTN1A1Q13410 526 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 MAPRE2Q15555 327 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 FBXL19-AS1Q494R0 122 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 CDNFQ49AH0 187 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 AADACL4Q5VUY2 407 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 ITPRIPQ8IWB1 547 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 BBS7Q8IWZ6 715 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 SYS1Q8N2H4 156 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 CCNYL1Q8N7R7 359 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 NT5CQ8TCD5 201 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 GLT1D1Q96MS3 346 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 DERL3Q96Q80 235 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 MS4A8Q9BY19 250 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 MRPL20Q9BYC9 149 aaKnown RBP1.11□□□□□ -2.23
VPS13A-206ENST00000376646 SLC38A1Q9H2H9 487 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 XKR8Q9H6D3 395 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 HAUS4Q9H6D7 363 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 SND1-IT1Q9HBX3 110 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 AGPAT3Q9NRZ7 376 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 SDHAF2Q9NX18 166 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 DHCR7Q9UBM7 475 aaKnown RBP1.11□□□□□ -2.23
VPS13A-206ENST00000376646 AP3M1Q9Y2T2 418 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 NPHP4O75161 1426 aaPredicted RBP1.11□□□□□ -2.23
VPS13A-206ENST00000376646 ELP1O95163 1332 aa1.11□□□□□ -2.23
VPS13A-206ENST00000376646 ADAMTSL3P82987 1691 aa1.1□□□□□ -2.23
VPS13A-206ENST00000376646 IGHV3OR16-8A0A075B7F1 116 aa1.1□□□□□ -2.23
VPS13A-206ENST00000376646 SLC5A10A0PJK1 596 aa1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms