RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 FAM212BQ9NTI7 297 aaPredicted RBP12.05□□□□□ -0.48
USP49-201ENST00000373006 ANAPC10Q9UM13 185 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 DMRT1Q9Y5R6 373 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 CPAMD8Q8IZJ3 1885 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 ABCA7Q8IZY2 2146 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 FIGNL2A6NMB9 653 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 C14orf28Q4W4Y0 310 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 LANCL3Q6ZV70 420 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 HSD17B11Q8NBQ5 300 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 OR14K1Q8NGZ2 314 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 NUDT16L1Q9BRJ7 211 aaKnown RBP12.04□□□□□ -0.48
USP49-201ENST00000373006 LRRC61Q9BV99 259 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 TREM2Q9NZC2 230 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 COPS7AQ9UBW8 275 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 URB1O60287 2271 aaKnown RBP12.04□□□□□ -0.48
USP49-201ENST00000373006 ZNF727A8MUV8 499 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 E9PLN8 166 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 HPNP05981 417 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 FABP4P15090 132 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 ZNF84P51523 738 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 FAM3AP98173 230 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 C6orf201Q7Z4U5 140 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 SULF2Q8IWU5 870 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 OR2AJ1Q8NGZ0 328 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 OIT3Q8WWZ8 545 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 REEP6Q96HR9 211 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 WFDC1Q9HC57 220 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 HS3ST3A1Q9Y663 406 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 POMT1Q9Y6A1 747 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 MYO7BQ6PIF6 2116 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 DHRS7CA6NNS2 312 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 CYTIPO60759 359 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 JMJD7P0C870 316 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 MDKP21741 143 aaPredicted RBP12.04□□□□□ -0.48
USP49-201ENST00000373006 PCP4P48539 62 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 FBXW4P57775 412 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 LYPD6BQ8NI32 183 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 SCRT1Q9BWW7 348 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.04□□□□□ -0.486e-7■■■■□ 25.9
USP49-201ENST00000373006 RFNGQ9Y644 331 aa12.04□□□□□ -0.48
USP49-201ENST00000373006 IGKV3D-11A0A0A0MRZ8 115 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 ZNF726A6NNF4 738 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 MASP2O00187 686 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 SFTPCP11686 197 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 GABRG2P18507 467 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 CSNK1EP49674 416 aaKnown RBP12.03□□□□□ -0.48
USP49-201ENST00000373006 HSD11B2P80365 405 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 COL13A1Q5TAT6 717 aaPredicted RBP12.03□□□□□ -0.48
USP49-201ENST00000373006 TSPO2Q5TGU0 170 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 RPUSD3Q6P087 351 aaKnown RBP12.03□□□□□ -0.48
USP49-201ENST00000373006 OPN5Q6U736 354 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 SGPP2Q8IWX5 399 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 TOMM40LQ969M1 308 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 CHST11Q9NPF2 352 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 GAR1Q9NY12 217 aaKnown RBP12.03□□□□□ -0.48
USP49-201ENST00000373006 ZDHHC8Q9ULC8 765 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 SDK2Q58EX2 2172 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 CELSR3Q9NYQ7 3312 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 ZNF705GA8MUZ8 300 aaPredicted RBP12.03□□□□□ -0.48
USP49-201ENST00000373006 ATXN7O15265 892 aaPredicted RBP12.03□□□□□ -0.48
USP49-201ENST00000373006 SLC34A2O95436 690 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 IFNA21P01568 189 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 TAS2R46P59540 309 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 DCAF7P61962 342 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 HMGN3Q15651 99 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 KISS1Q15726 138 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 ZNF283Q8N7M2 679 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 GNRHR2Q96P88 292 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 TAAR9Q96RI9 348 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 PECRQ9BY49 303 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 KCNJ16Q9NPI9 418 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 SERINC1Q9NRX5 453 aa12.03□□□□□ -0.48
USP49-201ENST00000373006 RCL1Q9Y2P8 373 aaKnown RBP12.03□□□□□ -0.48
USP49-201ENST00000373006 MBPP02686 304 aaPredicted RBP12.02□□□□□ -0.48
USP49-201ENST00000373006 GAPDHP04406 335 aaKnown RBP12.02□□□□□ -0.48
USP49-201ENST00000373006 GABRR1P24046 479 aa12.02□□□□□ -0.48
USP49-201ENST00000373006 RAB5CP51148 216 aa12.02□□□□□ -0.48
USP49-201ENST00000373006 RRADP55042 308 aa12.02□□□□□ -0.48
USP49-201ENST00000373006 CLRN1P58418 232 aa12.02□□□□□ -0.48
USP49-201ENST00000373006 ZNF239Q16600 458 aaKnown RBP12.02□□□□□ -0.48
USP49-201ENST00000373006 ZNF343Q6P1L6 599 aa12.02□□□□□ -0.48
USP49-201ENST00000373006 TMEM156Q8N614 296 aa12.02□□□□□ -0.48
USP49-201ENST00000373006 RARRES2Q99969 163 aa12.02□□□□□ -0.48
USP49-201ENST00000373006 FBRSQ9HAH7 460 aa12.02□□□□□ -0.48
USP49-201ENST00000373006 MCTS1Q9ULC4 181 aaKnown RBP12.02□□□□□ -0.48
USP49-201ENST00000373006 SLC31A2O15432 143 aa12.02□□□□□ -0.49
USP49-201ENST00000373006 DANCRP0C864 163 aa12.02□□□□□ -0.49
USP49-201ENST00000373006 NHLH2Q02577 135 aa12.02□□□□□ -0.49
USP49-201ENST00000373006 RELQ04864 619 aaPredicted RBP12.02□□□□□ -0.49
USP49-201ENST00000373006 TMEM234Q8WY98 164 aa12.02□□□□□ -0.49
USP49-201ENST00000373006 HEXBP07686 556 aa12.02□□□□□ -0.49
USP49-201ENST00000373006 PPP1CCP36873 323 aaKnown RBP12.02□□□□□ -0.49
USP49-201ENST00000373006 GABREP78334 506 aa12.02□□□□□ -0.49
USP49-201ENST00000373006 FOXF1Q12946 379 aa12.02□□□□□ -0.49
USP49-201ENST00000373006 PLXDC2Q6UX71 529 aa12.02□□□□□ -0.49
USP49-201ENST00000373006 MFSD8Q8NHS3 518 aa12.02□□□□□ -0.49
USP49-201ENST00000373006 TMEM131Q92545 1883 aa12.02□□□□□ -0.49
USP49-201ENST00000373006 SHDQ96IW2 340 aa12.02□□□□□ -0.49
USP49-201ENST00000373006 TPSD1Q9BZJ3 242 aa12.02□□□□□ -0.49
USP49-201ENST00000373006 TUBA4BQ9H853 241 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms