RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 MUC20Q8N307 709 aaPredicted RBP12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 CCDC54Q8NEL0 328 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 OR13C3Q8NGS6 347 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 OR5AK2Q8NH90 309 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 TRMT10AQ8TBZ6 339 aaKnown RBP12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 FGGYQ96C11 551 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 TSC22D3Q99576 134 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 CHST5Q9GZS9 411 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 EXOSC4Q9NPD3 245 aaKnown RBP12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 BABAM2Q9NXR7 383 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 PCDHB10Q9UN67 800 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 FN1P02751 2386 aaKnown RBP12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 PQLC2LA1A4F0 135 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 TMEM212A6NML5 194 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 A8MV72 311 aaPredicted RBP12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 B4DSR2 109 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 ZNF701M0R085 212 aaPredicted RBP12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 GMFBP60983 142 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 RPL22L1Q6P5R6 122 aaKnown RBP12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 NDNFQ8TB73 568 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 OOEPA6NGQ2 149 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 SRRM5B3KS81 715 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 LGALS8O00214 317 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 AKR7A2O43488 359 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 PLPP2O43688 288 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 FSTL3O95633 263 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 MSMBP08118 114 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 ZNF12P17014 697 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 HAGHLQ6PII5 290 aaPredicted RBP12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 FAM90A1Q86YD7 464 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 PHC2Q8IXK0 858 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 UFD1Q92890 307 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 COMMD4Q9H0A8 199 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 WDR13Q9H1Z4 485 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 PTTG2Q9NZH5 202 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 ARHGAP32A7KAX9 2087 aa12.6□□□□□ -0.39
SMPDL3A-201ENST00000368440 IGKV1-27A0A075B6S5 117 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 IGKV1-9A0A0C4DH69 117 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 FAM230AA0A1W2PPH8 454 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 OGG1O15527 345 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 SYNGR1O43759 233 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 WNT2P09544 360 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 RPS2P15880 293 aaKnown RBP12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 ZNF20P17024 532 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 ZNF182P17025 639 aaPredicted RBP12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 CELP19835 753 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 ZFP36P26651 326 aaKnown RBP12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 CFHR2P36980 270 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 RPS25P62851 125 aaKnown RBP12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 LCN2P80188 198 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 CCDC58Q4VC31 144 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 CALHM1Q8IU99 346 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 HAVCR2Q8TDQ0 301 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 AQP3Q92482 292 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 C10orf35Q96D05 121 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 CENPOQ9BU64 300 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 TRIM36Q9NQ86 728 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 KCNS2Q9ULS6 477 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 NIPBLQ6KC79 2804 aaeCLIP12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 GYPAP02724 150 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 CPEP16870 476 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 HAAOP46952 286 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 TEX36Q5VZQ5 186 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 DCDC5Q6ZRR9 648 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 ANGPTL5Q86XS5 388 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 OR13C5Q8NGS8 318 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 OR10Z1Q8NGY1 313 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 OR51F2Q8NH61 342 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 PP6455Q8WZ26 134 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 SMIM19Q96E16 107 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 ZNF488Q96MN9 340 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 TMED9Q9BVK6 235 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 CTSZQ9UBR2 303 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 SVEP1Q4LDE5 3571 aa12.59□□□□□ -0.39
SMPDL3A-201ENST00000368440 HIVEP2P31629 2446 aa12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 KIAA1324LA8MWY0 1029 aaPredicted RBP12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 TNFRSF13BO14836 293 aaPredicted RBP12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 PHF1O43189 567 aaPredicted RBP12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 GPX5O75715 221 aa12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 GATBO75879 557 aaKnown RBP12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 TFF1P04155 84 aa12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 DVL1P1P54792 670 aaPredicted RBP12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 DMKNQ6E0U4 476 aaPredicted RBP12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 IL17RELQ6ZVW7 336 aa12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 RNF144BQ7Z419 303 aa12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 BATF2Q8N1L9 274 aa12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 TSEN15Q8WW01 171 aaKnown RBP12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 TMEM186Q96B77 213 aa12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 SNTG1Q9NSN8 517 aa12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 HIF1ANQ9NWT6 349 aa12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 NDUFB11Q9NX14 153 aa12.58□□□□□ -0.4
SMPDL3A-201ENST00000368440 TRAV38-1A0A0B4J264 116 aa12.57□□□□□ -0.4
SMPDL3A-201ENST00000368440 A0A1B0GW55 424 aa12.57□□□□□ -0.4
SMPDL3A-201ENST00000368440 DUX4L2P0CJ85 424 aa12.57□□□□□ -0.4
SMPDL3A-201ENST00000368440 DUX4L3P0CJ86 424 aa12.57□□□□□ -0.4
SMPDL3A-201ENST00000368440 DUX4L4P0CJ87 422 aa12.57□□□□□ -0.4
SMPDL3A-201ENST00000368440 DUX4L5P0CJ88 424 aa12.57□□□□□ -0.4
SMPDL3A-201ENST00000368440 DUX4L6P0CJ89 424 aa12.57□□□□□ -0.4
SMPDL3A-201ENST00000368440 DUX4L7P0CJ90 424 aa12.57□□□□□ -0.4
SMPDL3A-201ENST00000368440 ATF1P18846 271 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms