RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 SGCEO43556 437 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 BPNT1O95861 308 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 HLA-AP01891 365 aaKnown RBP11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 HLA-GP17693 338 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 OR3A2P47893 321 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 PRKXP51817 358 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 ZNF260Q3ZCT1 412 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 FBXW9Q5XUX1 488 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 NSUN5P2Q63ZY6 315 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 C11orf87Q6NUJ2 197 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 LYG2Q86SG7 212 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 SLC25A42Q86VD7 318 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 ZNF283Q8N7M2 679 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 ACBD4Q8NC06 268 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 PXT1Q8NFP0 134 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 ST8SIA2Q92186 375 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 SPTSSAQ969W0 71 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 FGGYQ96C11 551 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 NKX3-1Q99801 234 aaPredicted RBP11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 SLC6A7Q99884 636 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 ZMAT3Q9HA38 289 aaKnown RBP11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 C12orf4Q9NQ89 552 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 TIMM10BQ9Y5J6 103 aa11.45□□□□□ -0.58
SQSTM1-201ENST00000360718 TMEM235A6NFC5 223 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 ERCC1P07992 297 aaPredicted RBP11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 ABOP16442 354 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 GNALP38405 381 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 TDGF1P3P51864 188 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 ECH1Q13011 328 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 BTN1A1Q13410 526 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 RAB35Q15286 201 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 MOGAT2Q3SYC2 334 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 C9orf135Q5VTT2 229 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 OR10K2Q6IF99 312 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 FAHD2BQ6P2I3 314 aaPredicted RBP11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 TRAPPC6BQ86SZ2 158 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 FJX1Q86VR8 437 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 LYPD6Q86Y78 171 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 CNEP1R1Q8N9A8 125 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 C9orf106Q8NAJ2 232 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 CHST4Q8NCG5 386 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 OR4D6Q8NGJ1 314 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 OR5D14Q8NGL3 314 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 OR13C8Q8NGS7 320 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 FAHD2AQ96GK7 314 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 NUDT16L1Q9BRJ7 211 aaKnown RBP11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 C1QTNF6Q9BXI9 259 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 FAM206AQ9NX38 181 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 MYEF2Q9P2K5 600 aaKnown RBP11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 PRSS50Q9UI38 385 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 ACACBO00763 2458 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 SYT7O43581 403 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 ATF4P18848 351 aaPredicted RBP11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 TBPP20226 339 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 CX3CR1P49238 355 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 SEM1Q6ZVN7 128 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 CD163Q86VB7 1156 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 SKA3Q8IX90 412 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 RPRMLQ8N4K4 120 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 OR1M1Q8NGA1 313 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 ST8SIA4Q92187 359 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 PHYHIPLQ96FC7 376 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 PHB2Q99623 299 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 PBOV1Q9GZY1 135 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 CNTD2Q9H8S5 307 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 IFT46Q9NQC8 304 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 ZC4H2Q9NQZ6 224 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 TNFSF18Q9UNG2 199 aa11.44□□□□□ -0.58
SQSTM1-201ENST00000360718 RAB27BO00194 218 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 RLN2P04090 185 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 IFNA6P05013 189 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 CSN2P05814 226 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 ZNF32P17041 273 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 RAB3AP20336 220 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 ANOS1P23352 680 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 IL32P24001 234 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 CTSSP25774 331 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 ZNF121P58317 390 aaPredicted RBP11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 GUSBP1Q15486 140 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 RTL6Q6ICC9 239 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 ACOT7LQ6ZUV0 252 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 SNRNP40Q96DI7 357 aaKnown RBP11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 PRORYQ9H606 182 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 RASL12Q9NYN1 266 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 F5H5K5 113 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 LGALS8O00214 317 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 BCL2L11O43521 198 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 ZBTB25P24278 435 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 SLC6A9P48067 706 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 FAM189A2Q15884 450 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 NKPD1Q17RQ9 610 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 OR4S1Q8NGB4 309 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 FGFBP3Q8TAT2 258 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 THAP6Q8TBB0 222 aa11.43□□□□□ -0.58
SQSTM1-201ENST00000360718 TMEM8BA6NDV4 472 aa11.42□□□□□ -0.58
SQSTM1-201ENST00000360718 IL2RAP01589 272 aa11.42□□□□□ -0.58
SQSTM1-201ENST00000360718 TTRP02766 147 aa11.42□□□□□ -0.58
SQSTM1-201ENST00000360718 CHRM2P08172 466 aa11.42□□□□□ -0.58
SQSTM1-201ENST00000360718 PATE4P0C8F1 98 aa11.42□□□□□ -0.58
SQSTM1-201ENST00000360718 IL13RA1P78552 427 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms