RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 NME2P22392 152 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 MEOX1P50221 254 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 BAMBIQ13145 260 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 OR2F1Q13607 317 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 AANATQ16613 207 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 ZNF660Q6AZW8 331 aaPredicted RBP20.79■□□□□ 0.92
TRIM54-201ENST00000296098 OVCH2Q7RTZ1 564 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 KCNRGQ8N5I3 272 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 IL22RA1Q8N6P7 574 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 SPSB4Q96A44 273 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 TECTBQ96PL2 329 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 PRRG4Q9BZD6 226 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 RDH8Q9NYR8 311 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 SLC7A11Q9UPY5 501 aa20.79■□□□□ 0.92
TRIM54-201ENST00000296098 C5orf51A6NDU8 294 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 EEF1E1-BLOC1S5C9J1V9 151 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 SP1P08047 785 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 FUT6P51993 359 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 C9orf135Q5VTT2 229 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 PLCXD3Q63HM9 321 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 SIGIRRQ6IA17 410 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 MDS2Q8NDY4 140 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 COQ8AQ8NI60 647 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 RTBDNQ9BSG5 229 aaPredicted RBP20.78■□□□□ 0.92
TRIM54-201ENST00000296098 FREM2Q5SZK8 3169 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 BDP1A6H8Y1 2624 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 SPDEFO95238 335 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 NMBP08949 121 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 PI3P19957 117 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 SERPINF1P36955 418 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 UBA52P62987 128 aaKnown RBP20.78■□□□□ 0.92
TRIM54-201ENST00000296098 TAF9Q16594 264 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 RPUSD3Q6P087 351 aaKnown RBP20.78■□□□□ 0.92
TRIM54-201ENST00000296098 CLEC18BQ6UXF7 455 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 MOB3CQ70IA8 216 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 BCO1Q9HAY6 547 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 HSF4Q9ULV5 492 aa20.78■□□□□ 0.92
TRIM54-201ENST00000296098 ZNF724A8MTY0 619 aa20.77■□□□□ 0.92
TRIM54-201ENST00000296098 PDGFAP04085 211 aa20.77■□□□□ 0.92
TRIM54-201ENST00000296098 ATXN7L3Q14CW9 347 aaPredicted RBP20.77■□□□□ 0.92
TRIM54-201ENST00000296098 SURF2Q15527 256 aaPredicted RBP20.77■□□□□ 0.92
TRIM54-201ENST00000296098 SLC9A3R2Q15599 337 aa20.77■□□□□ 0.92
TRIM54-201ENST00000296098 NSUN5P2Q63ZY6 315 aa20.77■□□□□ 0.92
TRIM54-201ENST00000296098 THAP6Q8TBB0 222 aa20.77■□□□□ 0.92
TRIM54-201ENST00000296098 HDHD3Q9BSH5 251 aaPredicted RBP20.77■□□□□ 0.92
TRIM54-201ENST00000296098 A0A096LPE4 126 aa20.77■□□□□ 0.91
TRIM54-201ENST00000296098 A0A0B4J2A0 478 aa20.77■□□□□ 0.91
TRIM54-201ENST00000296098 A0A1W2PPZ6 126 aa20.77■□□□□ 0.91
TRIM54-201ENST00000296098 RRP8O43159 456 aaKnown RBP20.77■□□□□ 0.91
TRIM54-201ENST00000296098 ARPC4P59998 168 aa20.77■□□□□ 0.91
TRIM54-201ENST00000296098 PIGCQ92535 297 aa20.77■□□□□ 0.91
TRIM54-201ENST00000296098 VRK1Q99986 396 aaPredicted RBP20.77■□□□□ 0.91
TRIM54-201ENST00000296098 RNF122Q9H9V4 155 aa20.77■□□□□ 0.91
TRIM54-201ENST00000296098 IL36GQ9NZH8 169 aa20.77■□□□□ 0.91
TRIM54-201ENST00000296098 SHPKQ9UHJ6 478 aa20.77■□□□□ 0.91
TRIM54-201ENST00000296098 IGKV1D-8A0A087WSZ0 117 aa20.76■□□□□ 0.91
TRIM54-201ENST00000296098 C13orf42A0A1B0GVH6 325 aa20.76■□□□□ 0.91
TRIM54-201ENST00000296098 KANTRA0A1W2PQU2 76 aa20.76■□□□□ 0.91
TRIM54-201ENST00000296098 hCG_1807616A0A1W2PRN6 198 aa20.76■□□□□ 0.91
TRIM54-201ENST00000296098 RNF222A6NCQ9 220 aa20.76■□□□□ 0.91
TRIM54-201ENST00000296098 KLRC4-KLRK1H3BQV0 150 aa20.76■□□□□ 0.91
TRIM54-201ENST00000296098 PPIAP62937 165 aaKnown RBP20.76■□□□□ 0.91
TRIM54-201ENST00000296098 SUPT4H1P63272 117 aaKnown RBP20.76■□□□□ 0.91
TRIM54-201ENST00000296098 COLCA1Q6ZS62 124 aa20.76■□□□□ 0.91
TRIM54-201ENST00000296098 ZSCAN4Q8NAM6 433 aaPredicted RBP20.76■□□□□ 0.91
TRIM54-201ENST00000296098 PXT1Q8NFP0 134 aa20.76■□□□□ 0.91
TRIM54-201ENST00000296098 APH1AQ96BI3 265 aa20.76■□□□□ 0.91
TRIM54-201ENST00000296098 SLX1AQ9BQ83 275 aa20.76■□□□□ 0.91
TRIM54-201ENST00000296098 EDARQ9UNE0 448 aa20.76■□□□□ 0.91
TRIM54-201ENST00000296098 IGKV1-12A0A0C4DH73 117 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 BCL2L11O43521 198 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 IGKV1D-12P01611 117 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 CRHP06850 196 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 CHATP28329 748 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 PDZK1IP1Q13113 114 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 ACOT7LQ6ZUV0 252 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 NAXEQ8NCW5 288 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 FAAP24Q9BTP7 215 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 NMES1Q9C002 83 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 RAB18Q9NP72 206 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 MBD2Q9UBB5 411 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 AK3Q9UIJ7 227 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 POM121CA8CG34 1229 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 ECI1P42126 302 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 RNPS1Q15287 305 aaKnown RBP20.75■□□□□ 0.91
TRIM54-201ENST00000296098 C3AR1Q16581 482 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 OSR2Q8N2R0 312 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 ST8SIA2Q92186 375 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 CXorf58Q96LI9 332 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 CHMP1AQ9HD42 196 aaPredicted RBP20.75■□□□□ 0.91
TRIM54-201ENST00000296098 MED9Q9NWA0 146 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 ZNF581Q9P0T4 197 aa20.75■□□□□ 0.91
TRIM54-201ENST00000296098 MSTNO14793 375 aa20.74■□□□□ 0.91
TRIM54-201ENST00000296098 HLA-HP01893 362 aa20.74■□□□□ 0.91
TRIM54-201ENST00000296098 RLN2P04090 185 aa20.74■□□□□ 0.91
TRIM54-201ENST00000296098 PGAM2P15259 253 aa20.74■□□□□ 0.91
TRIM54-201ENST00000296098 CYCSP99999 105 aaKnown RBP20.74■□□□□ 0.91
TRIM54-201ENST00000296098 PIGYQ3MUY2 71 aa20.74■□□□□ 0.91
TRIM54-201ENST00000296098 RGS7BPQ6MZT1 257 aaPredicted RBP20.74■□□□□ 0.91
TRIM54-201ENST00000296098 RBPMSQ93062 196 aaKnown RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms