RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 LINC01006Q8NI28 216 aa7.97□□□□□ -1.13
VPS41-201ENST00000265745 AQP3Q92482 292 aa7.97□□□□□ -1.13
VPS41-201ENST00000265745 H1FXQ92522 213 aaKnown RBP7.97□□□□□ -1.13
VPS41-201ENST00000265745 SDSLQ96GA7 329 aa7.97□□□□□ -1.13
VPS41-201ENST00000265745 CNN2Q99439 309 aaKnown RBP7.97□□□□□ -1.13
VPS41-201ENST00000265745 SEMA6AQ9H2E6 1030 aa7.97□□□□□ -1.13
VPS41-201ENST00000265745 DPAGT1Q9H3H5 408 aa7.97□□□□□ -1.13
VPS41-201ENST00000265745 ZNF222Q9UK12 451 aa7.97□□□□□ -1.13
VPS41-201ENST00000265745 PIGLQ9Y2B2 252 aa7.97□□□□□ -1.13
VPS41-201ENST00000265745 CAB39Q9Y376 341 aaPredicted RBP7.97□□□□□ -1.13
VPS41-201ENST00000265745 MAB21L2Q9Y586 359 aa7.97□□□□□ -1.13
VPS41-201ENST00000265745 ZAR1LA6NP61 321 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 G3V2T6 193 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 M0R129 80 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 M0R1W7 72 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 NPFFO15130 113 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 SHOXO15266 292 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 MAGEB4O15481 346 aaPredicted RBP7.96□□□□□ -1.14
VPS41-201ENST00000265745 KCNAB3O43448 404 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 MTRF1O75570 445 aaKnown RBP7.96□□□□□ -1.14
VPS41-201ENST00000265745 DHRS3O75911 302 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 NRASP01111 189 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 FBP1P09467 338 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 NDUFB7P17568 137 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 EEF1B2P24534 225 aaKnown RBP7.96□□□□□ -1.14
VPS41-201ENST00000265745 GABRA2P47869 451 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 UBE2E1P51965 193 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 CXCR4P61073 352 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 SUMO1P63165 101 aaKnown RBP7.96□□□□□ -1.14
VPS41-201ENST00000265745 TAF9Q16594 264 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 NXNL2Q5VZ03 156 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 TMEM42Q69YG0 159 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 C12orf73Q69YU5 71 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 KDM4DQ6B0I6 523 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 FDX2Q6P4F2 183 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 HAGHLQ6PII5 290 aaPredicted RBP7.96□□□□□ -1.14
VPS41-201ENST00000265745 COMMD2Q86X83 199 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 ELMOD2Q8IZ81 293 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 TCEANCQ8N8B7 351 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 ZSCAN4Q8NAM6 433 aaPredicted RBP7.96□□□□□ -1.14
VPS41-201ENST00000265745 TMEM163Q8TC26 289 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 DUS3LQ96G46 650 aaKnown RBP7.96□□□□□ -1.14
VPS41-201ENST00000265745 MNTQ99583 582 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 CITED1Q99966 193 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 APOL4Q9BPW4 351 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 TTTY10Q9BZA0 68 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 PRRG3Q9BZD7 231 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 METTL8Q9H825 291 aaKnown RBP7.96□□□□□ -1.14
VPS41-201ENST00000265745 ADGRL4Q9HBW9 690 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 KRT84Q9NSB2 600 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 RASL12Q9NYN1 266 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 H2AFY2Q9P0M6 372 aaPredicted RBP7.96□□□□□ -1.14
VPS41-201ENST00000265745 ENPP5Q9UJA9 477 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 IKZF2Q9UKS7 526 aa7.96□□□□□ -1.14
VPS41-201ENST00000265745 A0A1B0GTI1 187 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 A0A1W2PRD5 423 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 A0A1W2PRF3 423 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 A0A1W2PRM7 423 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 RFPL4AA6NLU0 287 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 LOC110117498-PIK3R3F6TDL0 507 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 RFPL4AL1F8VTS6 287 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 DLGAP1O14490 977 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 SYNGR1O43759 233 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 NOS1APO75052 506 aaPredicted RBP7.95□□□□□ -1.14
VPS41-201ENST00000265745 SAA4P35542 130 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 PROK1P58294 105 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 KRTAP10-3P60369 221 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 ACTR3P61158 418 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 EGR3Q06889 387 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 ACSM1Q08AH1 577 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 KLRD1Q13241 179 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 CLVS2Q5SYC1 327 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 PLCXD3Q63HM9 321 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 NCR3LG1Q68D85 454 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 HCP5Q6MZN7 132 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 ACP7Q6ZNF0 438 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 GDPGP1Q6ZNW5 385 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 PLEKHG7Q6ZR37 379 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 Q6ZSR3 168 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 Q6ZSV7 163 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 ZNF573Q86YE8 665 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 ZDHHC13Q8IUH4 622 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 SLC35F2Q8IXU6 374 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 PNKDQ8N490 385 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 POC1AQ8NBT0 407 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 OR14K1Q8NGZ2 314 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 LRTOMTQ8WZ04 291 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 IL4I1Q96RQ9 567 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 MRPL18Q9H0U6 180 aaKnown RBP7.95□□□□□ -1.14
VPS41-201ENST00000265745 ELL3Q9HB65 397 aaPredicted RBP7.95□□□□□ -1.14
VPS41-201ENST00000265745 CLN6Q9NWW5 311 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 ZNRD1Q9P1U0 126 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 MRM2Q9UI43 246 aaKnown RBP7.95□□□□□ -1.14
VPS41-201ENST00000265745 OR52A1Q9UKL2 312 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 SF3B6Q9Y3B4 125 aaKnown RBP7.95□□□□□ -1.14
VPS41-201ENST00000265745 RNF114Q9Y508 228 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 AP4S1Q9Y587 144 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 R4GMQ9 66 aa7.95□□□□□ -1.14
VPS41-201ENST00000265745 DOCK11Q5JSL3 2073 aa7.94□□□□□ -1.14
VPS41-201ENST00000265745 A0A1W2PQ09 198 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms