RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MRPL19P49406 292 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 RGS6P49758 472 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 ERFP50548 548 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 RAB7AP51149 207 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 UBE2MP61081 183 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 RPS15P62841 145 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 PSG4Q00888 419 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 IRF8Q02556 426 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 ATP5G2Q06055 141 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 KDSRQ06136 332 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 C2orf54Q08AI8 447 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 BIKQ13323 160 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 NAB1Q13506 487 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 IDI1Q13907 227 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 GABRA6Q16445 453 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 HADHQ16836 314 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 TRMT5Q32P41 509 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 FBXL19-AS1Q494R0 122 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 CEP55Q53EZ4 464 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 CLLU1OSQ5K130 101 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 CCDC183Q5T5S1 534 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 N4BP2L1Q5TBK1 243 aaPredicted RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 KCTD16Q68DU8 428 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR2T5Q6IEZ7 315 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 CYHR1Q6ZMK1 362 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 RGS9BPQ6ZS82 235 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 Q6ZSR6 202 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 TMPPEQ6ZT21 453 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 ZNF767PQ75MW2 155 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 TRMT10CQ7L0Y3 403 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 KRTAP19-3Q7Z4W3 81 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 MARCH3Q86UD3 253 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 UNC93AQ86WB7 457 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 NBPF5PQ86XG9 351 aaPredicted RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 RAB43Q86YS6 212 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 APRG1Q8IVJ8 170 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SLC22A9Q8IVM8 553 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SLC30A8Q8IWU4 369 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 HS3ST5Q8IZT8 346 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 VKORC1L1Q8N0U8 176 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 DAW1Q8N136 415 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 UBE2J2Q8N2K1 259 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 NECAB1Q8N987 351 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 C8orf31Q8N9H6 132 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SNX31Q8N9S9 440 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 WDR31Q8NA23 367 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 TTC29Q8NA56 475 aaPredicted RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR4C5Q8NGB2 326 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR4M2Q8NGB6 313 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR56B2PQ8NGI1 322 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR2K2Q8NGT1 345 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR2T29Q8NH02 315 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 AKR7LQ8NHP1 331 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SFXN5Q8TD22 340 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 CACNG8Q8WXS5 425 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 RSPH1Q8WYR4 309 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR5P3Q8WZ94 311 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 RAB1CQ92928 201 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 MAL2Q969L2 176 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 FBXO32Q969P5 355 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 RERGQ96A58 199 aaPredicted RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 ISG20Q96AZ6 181 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 UBE2WQ96B02 151 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 RASD2Q96D21 266 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 YIPF6Q96EC8 236 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SNF8Q96H20 258 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SLC25A44Q96H78 314 aaPredicted RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 PPP1R36Q96LQ0 422 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 PRRC1Q96M27 445 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 ALS2CR12Q96Q35 445 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 DERL3Q96Q80 235 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR8B2Q96RD0 313 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 B9D2Q9BPU9 175 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 RETNLBQ9BQ08 111 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 CENPKQ9BS16 269 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 SFXN3Q9BWM7 321 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 TTTY12Q9BZ98 90 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 ZYG11BQ9C0D3 744 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 STMN4Q9H169 189 aaPredicted RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 ARV1Q9H2C2 271 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 TXNIPQ9H3M7 391 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 PIGUQ9H490 435 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 ASB7Q9H672 318 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 REEP1Q9H902 201 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 MRM3Q9HC36 420 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 MRPS30Q9NP92 439 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 PRSS16Q9NQE7 514 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR2S2Q9NQN1 319 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 FBXO8Q9NRD0 319 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 TMEM100Q9NV29 134 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 DDIT4Q9NX09 232 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 LYARQ9NX58 379 aaKnown RBP0.02□□□□□ -2.41
VPS35-212ENST00000640313 PTTG3PQ9NZH4 202 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 PITPNC1Q9UKF7 332 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 KLF12Q9Y4X4 402 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 FADS3Q9Y5Q0 445 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 ELP1O95163 1332 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 UBN2Q6ZU65 1347 aa0.02□□□□□ -2.41
VPS35-212ENST00000640313 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP0.02□□□□□ -2.41
VPS35-212ENST00000640313 JCADQ9P266 1359 aa0.02□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms