RNA–Protein interactions for RNA: ENST00000622836.1

PCDHGC3-208, Transcript of protocadherin gamma subfamily C, 3, human

TSL 3

Gene PCDHGC3, Length 795 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDHGC3-208	ENST00000622836	ZNF676	Q8N7Q3	588 aa		11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	OR5T2	Q8NGG2	359 aa		11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	TRMT10A	Q8TBZ6	339 aa	Known RBP	11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	NPRL2	Q8WTW4	380 aa		11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	PELI1	Q96FA3	418 aa		11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	OCEL1	Q9H607	264 aa		11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	ISG20L2	Q9H9L3	353 aa	Known RBP	11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	SNTG1	Q9NSN8	517 aa		11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	MRPS18A	Q9NVS2	196 aa	Known RBP	11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	FRRS1L	Q9P0K9	344 aa		11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	CTSZ	Q9UBR2	303 aa		11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	INSIG2	Q9Y5U4	225 aa		11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	AUP1	Q9Y679	476 aa		11.65	□□□□□ -0.54
PCDHGC3-208	ENST00000622836	DOCK11	Q5JSL3	2073 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	ATR	Q13535	2644 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	IGHV2-70D	A0A0C4DH43	119 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	NKX6-3	A6NJ46	265 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	RHBDL1	O75783	438 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	AVP	P01185	164 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	OCM2	P0CE71	109 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	OCM	P0CE72	109 aa	Predicted RBP	11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	MYL12A	P19105	171 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	CCR9	P51686	369 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	NANOS3	P60323	173 aa	Known RBP	11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	MRPL28	Q13084	256 aa	Known RBP	11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	MED21	Q13503	144 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	ALKBH1	Q13686	389 aa	Known RBP	11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	CD276	Q5ZPR3	534 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	TMEM42	Q69YG0	159 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	FDX2	Q6P4F2	183 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	TMPRSS11A	Q6ZMR5	421 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	SLC36A1	Q7Z2H8	476 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	RAB40A	Q8WXH6	277 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	AQP3	Q92482	292 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	TMIGD2	Q96BF3	282 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	C12orf43	Q96C57	262 aa	Known RBP	11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	SEH1L	Q96EE3	360 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	CCL13	Q99616	98 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	COMMD4	Q9H0A8	199 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	WDR13	Q9H1Z4	485 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	RASSF4	Q9H2L5	321 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	CHCHD3	Q9NX63	227 aa	Known RBP	11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	HHLA2	Q9UM44	414 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	POLDIP2	Q9Y2S7	368 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	HSPE1-MOB4	S4R3N1	261 aa		11.64	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	MXRA5	Q9NR99	2828 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	PQLC2L	A1A4F0	135 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836		J3QT63	122 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	DVL1	O14640	695 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	ENSA	O43768	121 aa	Known RBP	11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	ISG15	P05161	165 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	GNAO1	P09471	354 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	CCDC159	P0C7I6	412 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	DCK	P27707	260 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	IKZF1	Q13422	519 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	CNN3	Q15417	329 aa	Known RBP	11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	ZNF841	Q6ZN19	808 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	C1orf229	Q6ZS94	237 aa	Predicted RBP	11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836		Q6ZSR3	168 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	C1QL2	Q7Z5L3	287 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	OR13C3	Q8NGS6	347 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	HAVCR2	Q8TDQ0	301 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	PP6455	Q8WZ26	134 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	ST8SIA4	Q92187	359 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	RNF166	Q96A37	237 aa	Predicted RBP	11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	C10orf35	Q96D05	121 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	NUDT16L1	Q9BRJ7	211 aa	Known RBP	11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	CHST5	Q9GZS9	411 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	FGF20	Q9NP95	211 aa	Predicted RBP	11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	NLK	Q9UBE8	527 aa		11.63	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	OR2AT4	A6NND4	320 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	TNFRSF13B	O14836	293 aa	Predicted RBP	11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	NDUFB3	O43676	98 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	PLAT	P00750	562 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	EPHA1	P21709	976 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	GABRA2	P47869	451 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	UBE2V2	Q15819	145 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	LRRC10	Q5BKY1	277 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	EGFL6	Q8IUX8	553 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	FAM216B	Q8N7L0	139 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	OR5AK2	Q8NH90	309 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	FGGY	Q96C11	551 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	BORCS8	Q96FH0	119 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	TMEM80	Q96HE8	168 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	JAM3	Q9BX67	310 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	VCX3B	Q9H321	246 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	SMURF1	Q9HCE7	757 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	KAAG1	Q9UBP8	84 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	OPN4	Q9UHM6	478 aa		11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	DIMT1	Q9UNQ2	313 aa	Known RBP	11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	EXOSC1	Q9Y3B2	195 aa	Known RBP	11.62	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	TRBV2	A0A0J9YWF9	115 aa		11.61	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	KIR2DS1	A0A191URI9	304 aa		11.61	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	EFCAB10	A6NFE3	127 aa		11.61	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	TMEM212	A6NML5	194 aa		11.61	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	OR4C45	A6NMZ5	311 aa		11.61	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	C22orf46	C9J442	243 aa		11.61	□□□□□ -0.55
PCDHGC3-208	ENST00000622836	TCF21	O43680	179 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms