RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SPICQ8N5J4 248 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 BOLLQ8N9W6 283 aaKnown RBP13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 C19orf18Q8NEA5 215 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 NPRL2Q8WTW4 380 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 GHSRQ92847 366 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 RAB39BQ96DA2 213 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 TECTBQ96PL2 329 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 BATF3Q9NR55 127 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 ZNF281Q9Y2X9 895 aa13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 LSM2Q9Y333 95 aaKnown RBP13.87□□□□□ -0.19
CCDC28A-202ENST00000611852 IGKV1-9A0A0C4DH69 117 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 FAM157AC9JC47 383 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 EGR1P18146 543 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 CD80P33681 288 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 ACSM1Q08AH1 577 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 SPHARQ15513 63 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 ZNF404Q494X3 552 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 SFRP4Q6FHJ7 346 aaPredicted RBP13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 HAGHLQ6PII5 290 aaPredicted RBP13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 Q71RC1 249 aaPredicted RBP13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 TRMT10AQ8TBZ6 339 aaKnown RBP13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 GPR148Q8TDV2 347 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 TSEN15Q8WW01 171 aaKnown RBP13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 AQP3Q92482 292 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 PGLYRP3Q96LB9 341 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 OR5M11Q96RB7 305 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 TMEM246Q9BRR3 403 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 PCDHB10Q9UN67 800 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 SLC7A11Q9UPY5 501 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 DHDHQ9UQ10 334 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 MALRD1Q5VYJ5 2156 aa13.86□□□□□ -0.19
CCDC28A-202ENST00000611852 CEACAM18A8MTB9 384 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 SRRM5B3KS81 715 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 LGALS8O00214 317 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 PLPP2O43688 288 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 RHBDL1O75783 438 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 ZNF16P17020 682 aaPredicted RBP13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 CELP19835 753 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 EEF1B2P24534 225 aaKnown RBP13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 HAAOP46952 286 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 BDH1Q02338 343 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 KCTD21Q4G0X4 260 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 ZNF573Q86YE8 665 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 PARP16Q8N5Y8 322 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 DEFB108BQ8NET1 73 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 OR10Z1Q8NGY1 313 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 YTHDF1Q9BYJ9 559 aaKnown RBP13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 CCDC90BQ9GZT6 254 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 PATZ1Q9HBE1 687 aaKnown RBP13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 IGKV1-27A0A075B6S5 117 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 PNMA8CA0A1B0GUJ8 204 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 FAM230AA0A1W2PPH8 454 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 OOEPA6NGQ2 149 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 C3orf80F5H4A9 247 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 SOX2P48431 317 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 FUT6P51993 359 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 CNN3Q15417 329 aaKnown RBP13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 TEX36Q5VZQ5 186 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 SERPINA12Q8IW75 414 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 LINC01356Q8N9X3 169 aa13.85□□□□□ -0.19
CCDC28A-202ENST00000611852 HIVEP2P31629 2446 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 TRAV38-1A0A0B4J264 116 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 B4DSR2 109 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 F5H0A9 414 aaPredicted RBP13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 J3QT63 122 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 AKR7A2O43488 359 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 TGFAP01135 160 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 CD1AP06126 327 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 OCM2P0CE71 109 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 ATF1P18846 271 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 GABARAPL2P60520 117 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 RPS11P62280 158 aaKnown RBP eCLIP13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 MED22Q15528 200 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 YIF1BQ5BJH7 314 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 ANGPTL5Q86XS5 388 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 FAM90A1Q86YD7 464 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 CALHM1Q8IU99 346 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 DNAAF1Q8NEP3 725 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 OR5D14Q8NGL3 314 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 OR13C5Q8NGS8 318 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 OR13C9Q8NGT0 318 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 ZNF671Q8TAW3 534 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 TMEM106AQ96A25 262 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 BORCS8Q96FH0 119 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 MRPS26Q9BYN8 205 aaKnown RBP13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 ZCCHC4Q9H5U6 513 aa13.84□□□□□ -0.19
CCDC28A-202ENST00000611852 TRBV5-5A0A0J9YX44 114 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 TNFRSF13BO14836 293 aaPredicted RBP13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 SYNGR1O43759 233 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 CD2P06729 351 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 WNT2P09544 360 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 MUC1P15941 1255 aaPredicted RBP13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 PRKACBP22694 351 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 MPZP25189 248 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 AZGP1P25311 298 aaKnown RBP13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 RBP2P50120 134 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 KCNJ8Q15842 424 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 ASPHD2Q6ICH7 369 aa13.83□□□□□ -0.2
CCDC28A-202ENST00000611852 DCDC5Q6ZRR9 648 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms