RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 SSX5O60225 188 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 ZNF735P0CB33 412 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 COX5AP20674 150 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 NHLH1Q02575 133 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 PDZK1IP1Q13113 114 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 ARFRP1Q13795 201 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 KRTCAP3Q53RY4 240 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 DMRTC1Q5HYR2 192 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 ZNF626Q68DY1 528 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 IDO2Q6ZQW0 420 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 PIAS4Q8N2W9 510 aaPredicted RBP12.26□□□□□ -0.45
LIG3-205ENST00000585941 RBMXL3Q8N7X1 1067 aaKnown RBP12.26□□□□□ -0.45
LIG3-205ENST00000585941 C9orf106Q8NAJ2 232 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 OR11H7Q8NGC8 314 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 ZNF75AQ96N20 296 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 TINAGL1Q9GZM7 467 aaPredicted RBP12.26□□□□□ -0.45
LIG3-205ENST00000585941 PLSCR4Q9NRQ2 329 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 EIF3KQ9UBQ5 218 aaKnown RBP12.26□□□□□ -0.45
LIG3-205ENST00000585941 STARD10Q9Y365 291 aa12.26□□□□□ -0.45
LIG3-205ENST00000585941 GTF3C1Q12789 2109 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 MEIKINA0A087WXM9 373 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 MBD3L4A6NDZ8 208 aaPredicted RBP12.25□□□□□ -0.45
LIG3-205ENST00000585941 MBD3L3A6NE82 208 aaPredicted RBP12.25□□□□□ -0.45
LIG3-205ENST00000585941 MBD3L5A6NJ08 208 aaPredicted RBP12.25□□□□□ -0.45
LIG3-205ENST00000585941 ZNF850A8MQ14 1090 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 M0QYG6 137 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 WDR1O75083 606 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 HTR3BO95264 441 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 HPXP02790 462 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 RLN1P04808 185 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 IFNA6P05013 189 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 CCL2P13500 99 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 ANXA7P20073 488 aaKnown RBP12.25□□□□□ -0.45
LIG3-205ENST00000585941 HOXC12P31275 282 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 RAD52P43351 418 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 GZMKP49863 264 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 NKX2-5P52952 324 aaPredicted RBP12.25□□□□□ -0.45
LIG3-205ENST00000585941 GABRA6Q16445 453 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 SLC36A1Q7Z2H8 476 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 ZDHHC23Q8IYP9 409 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 SAXO1Q8IYX7 474 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 SPICQ8N5J4 248 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 BEST4Q8NFU0 473 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 OR10K1Q8NGX5 313 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 MBD3L2Q8NHZ7 208 aaPredicted RBP12.25□□□□□ -0.45
LIG3-205ENST00000585941 ST8SIA4Q92187 359 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 HYLS1Q96M11 299 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 GPR137Q96N19 417 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 PAPOLGQ9BWT3 736 aaKnown RBP12.25□□□□□ -0.45
LIG3-205ENST00000585941 PECRQ9BY49 303 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 BEX1Q9HBH7 125 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 ZNF222Q9UK12 451 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 HSF4Q9ULV5 492 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 MPC1Q9Y5U8 109 aa12.25□□□□□ -0.45
LIG3-205ENST00000585941 PRSS44E7EML9 344 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 HOXD4P09016 255 aaPredicted RBP12.24□□□□□ -0.45
LIG3-205ENST00000585941 ZNF14P17017 642 aaPredicted RBP12.24□□□□□ -0.45
LIG3-205ENST00000585941 CXADRP78310 365 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 PRDX4Q13162 271 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 CEACAM21Q3KPI0 293 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 ZNF585AQ6P3V2 769 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 C17orf78Q8N4C9 275 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 ARRDC1Q8N5I2 433 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 OR4S1Q8NGB4 309 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 OR5A2Q8NGI9 324 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 OR4K15Q8NH41 348 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 WBP1Q96G27 269 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 HIST1H2AAQ96QV6 131 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 SCNM1Q9BWG6 230 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 RANBP3Q9H6Z4 567 aaPredicted RBP12.24□□□□□ -0.45
LIG3-205ENST00000585941 OBP2BQ9NPH6 170 aa12.24□□□□□ -0.45
LIG3-205ENST00000585941 TMEM82A0PJX8 343 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 PQLC2LA1A4F0 135 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 FIGNL2A6NMB9 653 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 ANKRD30BLA7E2S9 258 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 CD300LBA8K4G0 201 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 SPRY1O43609 319 aaPredicted RBP12.23□□□□□ -0.45
LIG3-205ENST00000585941 GFRA3O60609 400 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 RAD51DO75771 328 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 WISP2O76076 250 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 NGFP01138 241 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 FCER2P06734 321 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 WNT5AP41221 380 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 PER3P56645 1201 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 PRSS12P56730 875 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 TAS2R46P59540 309 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 P2RY6Q15077 328 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 VAX1Q5SQQ9 334 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 UNQ6126/PRO20091Q6UXV3 157 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 OSR2Q8N2R0 312 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 GVQW1Q8N7I0 195 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 ZDHHC22Q8N966 263 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 OR51F2Q8NH61 342 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 MS4A3Q96HJ5 214 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 SLC6A7Q99884 636 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 CDH20Q9HBT6 801 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 PLEKHJ1Q9NW61 149 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 DKK4Q9UBT3 224 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 ZNF69Q9UC07 566 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 PROCRQ9UNN8 238 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms