RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 LALBAP00709 142 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 AVPP01185 164 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 DUX4L2P0CJ85 424 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 DUX4L3P0CJ86 424 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 DUX4L4P0CJ87 422 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 DUX4L5P0CJ88 424 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 DUX4L6P0CJ89 424 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 DUX4L7P0CJ90 424 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 AMY2BP19961 511 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 CPT2P23786 658 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 TGM4P49221 684 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 LCN2P80188 198 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 UBE2V2Q15819 145 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 CHRFAM7AQ494W8 412 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 TMEM244Q5VVB8 128 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 DUX4L9Q6RFH8 374 aaPredicted RBP8.17□□□□□ -1.1
CLK3-220ENST00000567992 C1orf229Q6ZS94 237 aaPredicted RBP8.17□□□□□ -1.1
CLK3-220ENST00000567992 KCTD8Q6ZWB6 473 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 BOLLQ8N9W6 283 aaKnown RBP8.17□□□□□ -1.1
CLK3-220ENST00000567992 DEFB108BQ8NET1 73 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 ADAT3Q96EY9 351 aaPredicted RBP8.17□□□□□ -1.1
CLK3-220ENST00000567992 NEIL1Q96FI4 390 aaPredicted RBP8.17□□□□□ -1.1
CLK3-220ENST00000567992 MRPL48Q96GC5 212 aaKnown RBP8.17□□□□□ -1.1
CLK3-220ENST00000567992 TMEM80Q96HE8 168 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 ZNF184Q99676 751 aaPredicted RBP8.17□□□□□ -1.1
CLK3-220ENST00000567992 TMPRSS13Q9BYE2 586 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 ANKRD60Q9BZ19 345 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 WDR13Q9H1Z4 485 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 VCX3BQ9H321 246 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 MMP26Q9NRE1 261 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 CNOT2Q9NZN8 540 aaKnown RBP8.17□□□□□ -1.1
CLK3-220ENST00000567992 DUX4Q9UBX2 424 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 MIOXQ9UGB7 285 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 CDC42EP3Q9UKI2 254 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 PCDHB10Q9UN67 800 aa8.17□□□□□ -1.1
CLK3-220ENST00000567992 EXOSC1Q9Y3B2 195 aaKnown RBP8.17□□□□□ -1.1
CLK3-220ENST00000567992 SIRT4Q9Y6E7 314 aaPredicted RBP8.17□□□□□ -1.1
CLK3-220ENST00000567992 IGKV1-27A0A075B6S5 117 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 TRAV38-1A0A0B4J264 116 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 PPIAL4CA0A0B4J2A2 164 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 IGKV1-9A0A0C4DH69 117 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 EFCAB10A6NFE3 127 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 AKR7A2O43488 359 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 SYNGR1O43759 233 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 FOXH1O75593 365 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 GYPAP02724 150 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 MYF6P23409 242 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 MPZP25189 248 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 C21orf33P30042 268 aaPredicted RBP8.16□□□□□ -1.1
CLK3-220ENST00000567992 PITPNBP48739 271 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 ST3GAL4Q11206 333 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 MRPL28Q13084 256 aaKnown RBP8.16□□□□□ -1.1
CLK3-220ENST00000567992 CDK5R1Q15078 307 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 DOCK11Q5JSL3 2073 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 STUMQ69YW2 141 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 ASPHD2Q6ICH7 369 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 HAGHLQ6PII5 290 aaPredicted RBP8.16□□□□□ -1.1
CLK3-220ENST00000567992 IZUMO2Q6UXV1 221 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 AHSA2Q719I0 299 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 CALHM1Q8IU99 346 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 OR52N1Q8NH53 320 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 AQP3Q92482 292 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 SGCDQ92629 289 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 C10orf35Q96D05 121 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 HIST1H2AAQ96QV6 131 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 NR1H4Q96RI1 486 aaPredicted RBP8.16□□□□□ -1.1
CLK3-220ENST00000567992 PDCD1LG2Q9BQ51 273 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 SSBP3Q9BWW4 388 aaPredicted RBP8.16□□□□□ -1.1
CLK3-220ENST00000567992 SHARPINQ9H0F6 387 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 PLEKHA1Q9HB21 404 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 SMURF1Q9HCE7 757 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 PAK1IP1Q9NWT1 392 aaPredicted RBP8.16□□□□□ -1.1
CLK3-220ENST00000567992 ERVK-18Q9QC07 812 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 LPAR3Q9UBY5 353 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 OPN4Q9UHM6 478 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 HHLA2Q9UM44 414 aa8.16□□□□□ -1.1
CLK3-220ENST00000567992 CAB39Q9Y376 341 aaPredicted RBP8.16□□□□□ -1.1
CLK3-220ENST00000567992 A0A0G2JMP0 313 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 A0A0X1KG70 313 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 TMEM212A6NML5 194 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 C22orf46C9J442 243 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 J3QT63 122 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 SLC1A7O00341 560 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 GATBO75879 557 aaKnown RBP8.15□□□□□ -1.1
CLK3-220ENST00000567992 FSHBP01225 129 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 TFF1P04155 84 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 CCDC159P0C7I6 412 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 FAM157CP0CG43 387 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 PGA5P0DJD9 388 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 MUC1P15941 1255 aaPredicted RBP8.15□□□□□ -1.1
CLK3-220ENST00000567992 ZNF12P17014 697 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 MYL12AP19105 171 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 PCMT1P22061 227 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 HAAOP46952 286 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 GBX2P52951 348 aaPredicted RBP8.15□□□□□ -1.1
CLK3-220ENST00000567992 KCNJ8Q15842 424 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 CCDC58Q4VC31 144 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 ESCO2Q56NI9 601 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 C6orf141Q5SZD1 244 aa8.15□□□□□ -1.1
CLK3-220ENST00000567992 WDR25Q64LD2 544 aaPredicted RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms