RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 IGKV1-12A0A0C4DH73 117 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 MAGEA13PA6NCF6 341 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 A6NLC8 198 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 C22orf46C9J442 243 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 PPIAL4DF5H284 164 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 H0YHG0 523 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 LGALS8O00214 317 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 PIN1P1O15428 100 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 FSTL3O95633 263 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 IGKV1D-12P01611 117 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 MT-ND2P03891 347 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 PPIAL4FP0DN26 164 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 ATP6V1B1P15313 513 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 CRHBPP24387 322 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 CFHR2P36980 270 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 MDH2P40926 338 aaKnown RBP7.67□□□□□ -1.18
VPS35-206ENST00000565228 TGM4P49221 684 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 CEBPDP49716 269 aaPredicted RBP7.67□□□□□ -1.18
VPS35-206ENST00000565228 GZMKP49863 264 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 LCN2P80188 198 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 CLVS2Q5SYC1 327 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 ZBTB37Q5TC79 503 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 PLCXD3Q63HM9 321 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 DMKNQ6E0U4 476 aaPredicted RBP7.67□□□□□ -1.18
VPS35-206ENST00000565228 FAM220AQ7Z4H9 259 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 KCTD20Q7Z5Y7 419 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 NANOGP1Q8N7R0 232 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 LINC01356Q8N9X3 169 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 OR5A2Q8NGI9 324 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 OR51A2Q8NGJ7 313 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 SPACA5Q96QH8 159 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 GAL3ST1Q99999 423 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 TMPRSS13Q9BYE2 586 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 FN3KRPQ9HA64 309 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 BABAM2Q9NXR7 383 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 IL36RNQ9UBH0 155 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 ZNF222Q9UK12 451 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 CAB39Q9Y376 341 aaPredicted RBP7.67□□□□□ -1.18
VPS35-206ENST00000565228 PPIAL4AQ9Y536 164 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 SOX21Q9Y651 276 aaPredicted RBP7.67□□□□□ -1.18
VPS35-206ENST00000565228 DSCAML1Q8TD84 2053 aa7.67□□□□□ -1.18
VPS35-206ENST00000565228 COL6A5A8TX70 2615 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 IGKV1D-17A0A075B6S4 117 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 A0A1B0GVI7 797 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 hCG_1807616A0A1W2PRN6 198 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 OOEPA6NGQ2 149 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 SNTNA6NMZ2 147 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 DHRS7CA6NNS2 312 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 A8MV72 311 aaPredicted RBP7.66□□□□□ -1.18
VPS35-206ENST00000565228 PTGES3LE9PB15 166 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 CRLF1O75462 422 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 MSMBP08118 114 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 UBCP0CG48 685 aaKnown RBP7.66□□□□□ -1.18
VPS35-206ENST00000565228 GNALP38405 381 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 VHLP40337 213 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 MAP2K4P45985 399 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 DVL1P1P54792 670 aaPredicted RBP7.66□□□□□ -1.18
VPS35-206ENST00000565228 ERVK11-1P61568 191 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 ACTA2P62736 377 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 GNG3P63215 75 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 ACTG2P63267 376 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 SRSF2Q01130 221 aaKnown RBP7.66□□□□□ -1.18
VPS35-206ENST00000565228 CR1LQ2VPA4 569 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 FAM120AOSQ5T036 256 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 STUMQ69YW2 141 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 ZNF529Q6P280 563 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 HAGHLQ6PII5 290 aaPredicted RBP7.66□□□□□ -1.18
VPS35-206ENST00000565228 KCTD8Q6ZWB6 473 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 FAM216BQ8N7L0 139 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 SPERTQ8NA61 448 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 OR52N1Q8NH53 320 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 ERGIC1Q969X5 290 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 TMEM186Q96B77 213 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 CNBD2Q96M20 576 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 GAFA1Q96PS6 74 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 CCL13Q99616 98 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 MICU1Q9BPX6 476 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 RTL8AQ9BWD3 113 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 PPIL3Q9H2H8 161 aaKnown RBP7.66□□□□□ -1.18
VPS35-206ENST00000565228 HIF1ANQ9NWT6 349 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 MTCH1Q9NZJ7 389 aa7.66□□□□□ -1.18
VPS35-206ENST00000565228 POLR3KQ9Y2Y1 108 aaPredicted RBP7.66□□□□□ -1.18
VPS35-206ENST00000565228 EXOSC1Q9Y3B2 195 aaKnown RBP7.66□□□□□ -1.18
VPS35-206ENST00000565228 ATRQ13535 2644 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 TRBV2A0A0J9YWF9 115 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 TRBV5-5A0A0J9YX44 114 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 PNMA8CA0A1B0GUJ8 204 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 FAM230AA0A1W2PPH8 454 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 EFCAB10A6NFE3 127 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 TMEM210A6NLX4 147 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 ANXA2P2A6NMY6 339 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 A8MXK9 166 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 B4DSR2 109 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 DENRO43583 198 aaKnown RBP7.65□□□□□ -1.18
VPS35-206ENST00000565228 MTRF1O75570 445 aaKnown RBP7.65□□□□□ -1.18
VPS35-206ENST00000565228 INMTO95050 263 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 FSHBP01225 129 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 PGA5P0DJD9 388 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 CALCBP10092 127 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 ADRA2CP18825 462 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms