RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SGPP2Q8IWX5 399 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 DMBX1Q8NFW5 382 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 OR10X1Q8NGY0 326 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 KCNK17Q96T54 332 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 MRI1Q9BV20 369 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 CNTNAP3Q9BZ76 1288 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 SPACA1Q9HBV2 294 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 WNK1Q9H4A3 2382 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 IGHV3OR15-7A0A075B7D8 119 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 A0A0A6YYH2 397 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 A6NJ64 397 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 CPEP16870 476 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 ATF1P18846 271 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 MST1P26927 711 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 LRRC10Q5BKY1 277 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 OSR2Q8N2R0 312 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 FRRS1LQ9P0K9 344 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 IGKV1D-43A0A0B4J1Z2 117 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 LYRM1O43325 122 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 NAT2P11245 290 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 NPY4RP50391 375 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 SSX9Q7RTT3 188 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 OR1K1Q8NGR3 316 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 THAP6Q8TBB0 222 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 APH1BQ8WW43 257 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 ARL11Q969Q4 196 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 MMP28Q9H239 520 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 DENND4CQ5VZ89 1909 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 A0A0G2JMP0 313 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 A0A0X1KG70 313 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 BTBD17A6NE02 478 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 IFNA17P01571 189 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 LPLP06858 475 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 UBBP0CG47 229 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 PRF1P14222 555 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 GDNFP39905 211 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 ZNF92Q03936 586 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 ZP4Q12836 540 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 BAIAP2L2Q6UXY1 529 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 DOLPP1Q86YN1 238 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 CENPSQ8N2Z9 138 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 RBMXL3Q8N7X1 1067 aaKnown RBP8.06□□□□□ -1.12
VPS39-205ENST00000562258 INO80EQ8NBZ0 244 aaPredicted RBP8.06□□□□□ -1.12
VPS39-205ENST00000562258 OR4M2Q8NGB6 313 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 PHYHIPQ92561 330 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 PTDSS2Q9BVG9 487 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 KCNK15Q9H427 330 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 METTL17Q9H7H0 456 aaPredicted RBP8.06□□□□□ -1.12
VPS39-205ENST00000562258 ZNF275Q9NSD4 429 aaPredicted RBP8.06□□□□□ -1.12
VPS39-205ENST00000562258 CDH23Q9H251 3354 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 A0A1W2PPH5 198 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 CHRM2P08172 466 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 AKAIN1P0CW23 69 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 KCNJ8Q15842 424 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 SWI5Q1ZZU3 235 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 AGAP6Q5VW22 663 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 ZNF770Q6IQ21 691 aaPredicted RBP8.06□□□□□ -1.12
VPS39-205ENST00000562258 FAM58AQ8N1B3 248 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 TPRX1Q8N7U7 411 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 FADS6Q8N9I5 356 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 OR10V1Q8NGI7 309 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 RNF133Q8WVZ7 376 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 ZNF629Q9UEG4 869 aaPredicted RBP8.06□□□□□ -1.12
VPS39-205ENST00000562258 CLDN16Q9Y5I7 305 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 SNAPC5O75971 98 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 LALBAP00709 142 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 CDK2P24941 298 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 THBS4P35443 961 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 GNG10P50151 68 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 CAV2P51636 162 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 IL13RA1P78552 427 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 IDO2Q6ZQW0 420 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 RPRMLQ8N4K4 120 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 ADPRHL1Q8NDY3 354 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 PERPQ96FX8 193 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 MOV10Q9HCE1 1003 aaKnown RBP8.06□□□□□ -1.12
VPS39-205ENST00000562258 NDUFB11Q9NX14 153 aa8.06□□□□□ -1.12
VPS39-205ENST00000562258 TMA7Q9Y2S6 64 aaKnown RBP8.06□□□□□ -1.12
VPS39-205ENST00000562258 IGHV3-43A0A0B4J1X8 118 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 TMEM200CA6NKL6 621 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 TNFSF12O43508 249 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 IFI6P09912 130 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 GSTT2P0CG29 244 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 IGHV3-43DP0DP04 118 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 SERPINF1P36955 418 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 PTGFRP43088 359 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 OR3A4PP47883 348 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 RFX2P48378 723 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 NKX6-1P78426 367 aaPredicted RBP8.05□□□□□ -1.12
VPS39-205ENST00000562258 MUC15Q8N387 334 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 GDPD1Q8N9F7 314 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 HAVCR1Q96D42 359 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 LRRK1Q38SD2 2015 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 A6NHS1 94 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 HSD17B6O14756 317 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 SMAD7O15105 426 aaKnown RBP8.05□□□□□ -1.12
VPS39-205ENST00000562258 NXPH3O95157 252 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 GABARAPO95166 117 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 GPR6P46095 362 aaPredicted RBP8.05□□□□□ -1.12
VPS39-205ENST00000562258 ESCO2Q56NI9 601 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms