RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ZNF205O95201 554 aa18.3■□□□□ 0.52
SNX1-210ENST00000560260 IGHV2-70P01814 119 aa18.3■□□□□ 0.52
SNX1-210ENST00000560260 CNN3Q15417 329 aaKnown RBP18.3■□□□□ 0.52
SNX1-210ENST00000560260 CALHM1Q8IU99 346 aa18.3■□□□□ 0.52
SNX1-210ENST00000560260 GCSAMQ8N6F7 178 aa18.3■□□□□ 0.52
SNX1-210ENST00000560260 MAPK1IP1LQ8NDC0 245 aa18.3■□□□□ 0.52
SNX1-210ENST00000560260 C19orf18Q8NEA5 215 aa18.3■□□□□ 0.52
SNX1-210ENST00000560260 TSPAN14Q8NG11 270 aa18.3■□□□□ 0.52
SNX1-210ENST00000560260 REG4Q9BYZ8 158 aa18.3■□□□□ 0.52
SNX1-210ENST00000560260 NPTNQ9Y639 398 aa18.3■□□□□ 0.52
SNX1-210ENST00000560260 A0A1W2PPK0 400 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 ZNF879B4DU55 563 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 IFNL4K9M1U5 179 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 SYNGR1O43759 233 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 RHBDL1O75783 438 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 SC5DO75845 299 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 SERPINA3P01011 423 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 SMIM18P0DKX4 95 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 PSMB9P28065 219 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 CD80P33681 288 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 ZMYND11Q15326 602 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 FAM27D1Q5T7N8 215 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 HAGHLQ6PII5 290 aaPredicted RBP18.29■□□□□ 0.52
SNX1-210ENST00000560260 ANGPTL5Q86XS5 388 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 SERPINA12Q8IW75 414 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 OR11L1Q8NGX0 322 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 LRRC29Q8WV35 223 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 AQP3Q92482 292 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 TMEM203Q969S6 136 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 TECTBQ96PL2 329 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 SPACA5Q96QH8 159 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 NARFLQ9H6Q4 476 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 RNF7Q9UBF6 113 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 SLC7A11Q9UPY5 501 aa18.29■□□□□ 0.52
SNX1-210ENST00000560260 TRAV8-7A0A075B6U6 113 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 hCG_1807616A0A1W2PRN6 198 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 TRIM64CA6NLI5 447 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP18.28■□□□□ 0.52
SNX1-210ENST00000560260 SULT1B1O43704 296 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 CD2P06729 351 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 IGFBP3P17936 291 aaPredicted RBP18.28■□□□□ 0.52
SNX1-210ENST00000560260 HAAOP46952 286 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 FUT6P51993 359 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 GP2P55259 537 aaKnown RBP18.28■□□□□ 0.52
SNX1-210ENST00000560260 BTG1P62324 171 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 NEDD8Q15843 81 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 UNQ9370/PRO34162Q6UXP9 181 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 TMEM91Q6ZNR0 172 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 DNAAF1Q8NEP3 725 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 FCGR1BQ92637 280 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 HPS1Q92902 700 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 SPSB1Q96BD6 273 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 BORCS8Q96FH0 119 aa18.28■□□□□ 0.52
SNX1-210ENST00000560260 NR1H4Q96RI1 486 aaPredicted RBP18.28■□□□□ 0.52
SNX1-210ENST00000560260 MAGEA13PA6NCF6 341 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 LRRC30A6NM36 301 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 J3QT63 122 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 LHBP01229 141 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 FSTP19883 344 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 ACSM3Q53FZ2 586 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 MS4A15Q8N5U1 240 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 BOLLQ8N9W6 283 aaKnown RBP18.27■□□□□ 0.52
SNX1-210ENST00000560260 OR5D14Q8NGL3 314 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 MUL1Q969V5 352 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 RFT1Q96AA3 541 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 SEH1LQ96EE3 360 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 COX4I2Q96KJ9 171 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 PPIL3Q9H2H8 161 aaKnown RBP18.27■□□□□ 0.52
SNX1-210ENST00000560260 NOX4Q9NPH5 578 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 HIVEP1P15822 2718 aa18.27■□□□□ 0.52
SNX1-210ENST00000560260 A0A087WXM4 84 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 ALX3O95076 343 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 IRF2P14316 349 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 PRKACBP22694 351 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 MPZP25189 248 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 IL2RGP31785 369 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 CFHR2P36980 270 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 ZNF573Q86YE8 665 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 OR10Z1Q8NGY1 313 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 CLDND2Q8NHS1 167 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 RAB1CQ92928 201 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 TIMD4Q96H15 378 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 ZNF488Q96MN9 340 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 NKX3-1Q99801 234 aaPredicted RBP18.26■□□□□ 0.51
SNX1-210ENST00000560260 NDUFB11Q9NX14 153 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 ABCA2Q9BZC7 2435 aa18.26■□□□□ 0.51
SNX1-210ENST00000560260 SRRM5B3KS81 715 aa18.25■□□□□ 0.51
SNX1-210ENST00000560260 AKR7A2O43488 359 aa18.25■□□□□ 0.51
SNX1-210ENST00000560260 GPX5O75715 221 aa18.25■□□□□ 0.51
SNX1-210ENST00000560260 PLATP00750 562 aa18.25■□□□□ 0.51
SNX1-210ENST00000560260 RAB3AP20336 220 aa18.25■□□□□ 0.51
SNX1-210ENST00000560260 USF1P22415 310 aaPredicted RBP18.25■□□□□ 0.51
SNX1-210ENST00000560260 GABRA5P31644 462 aa18.25■□□□□ 0.51
SNX1-210ENST00000560260 RBP2P50120 134 aa18.25■□□□□ 0.51
SNX1-210ENST00000560260 FABP5Q01469 135 aa18.25■□□□□ 0.51
SNX1-210ENST00000560260 LOXL1Q08397 574 aaPredicted RBP18.25■□□□□ 0.51
SNX1-210ENST00000560260 SYT6Q5T7P8 510 aaPredicted RBP18.25■□□□□ 0.51
SNX1-210ENST00000560260 LHFPL2Q6ZUX7 228 aa18.25■□□□□ 0.51
SNX1-210ENST00000560260 C1orf87Q8N0U7 546 aa18.25■□□□□ 0.51
SNX1-210ENST00000560260 TMUB1Q9BVT8 246 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms