RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 AP3S1Q92572 193 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 SPTSSAQ969W0 71 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 TMIGD2Q96BF3 282 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 DNAJA3Q96EY1 480 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 KCTD7Q96MP8 289 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 TSSK2Q96PF2 358 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 ZNF385AQ96PM9 386 aaKnown RBP4.44□□□□□ -1.7
LDLR-209ENST00000558528 OR5M11Q96RB7 305 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 OR8B4Q96RC9 309 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 TBX5Q99593 518 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 HCAR1Q9BXC0 346 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 SLITRK2Q9H156 845 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 NCOR1P1Q9H4R4 102 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 NEK6Q9HC98 313 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 EXOSC4Q9NPD3 245 aaKnown RBP4.44□□□□□ -1.7
LDLR-209ENST00000558528 POLE4Q9NR33 117 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 NDUFB11Q9NX14 153 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 PTTG2Q9NZH5 202 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 CLEC2DQ9UHP7 191 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 CYB5R1Q9UHQ9 305 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 ATPIF1Q9UII2 106 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 GNG8Q9UK08 70 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 TP53TG5Q9Y2B4 290 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 LSM2Q9Y333 95 aaKnown RBP4.44□□□□□ -1.7
LDLR-209ENST00000558528 TIMM10BQ9Y5J6 103 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 SEC16AO15027 2179 aa4.44□□□□□ -1.7
LDLR-209ENST00000558528 SPTBP11277 2137 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 RP1L1Q8IWN7 2480 aaPredicted RBP4.43□□□□□ -1.7
LDLR-209ENST00000558528 IGHV3-15A0A0B4J1V0 119 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 FAM230AA0A1W2PPH8 454 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 TVP23AA6NH52 213 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ZNF879B4DU55 563 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ZNF814B7Z6K7 855 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 H7C1C5 153 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 PDCD5O14737 125 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 HS3ST1O14792 307 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 WNT9BO14905 357 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 CTDSPLO15194 276 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 MTRF1O75570 445 aaKnown RBP4.43□□□□□ -1.7
LDLR-209ENST00000558528 UBL3O95164 117 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 TSPAN15O95858 294 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 CD2P06729 351 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 COX5BP10606 129 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ABOP16442 354 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 MYL9P24844 172 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 HSD11B1P28845 292 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 MPGP29372 298 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 OPRM1P35372 400 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 SELENOPP49908 381 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 RORCP51449 518 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 OR12D2P58182 307 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 LCN6P62502 163 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ROR2Q01974 943 aaKnown RBP4.43□□□□□ -1.7
LDLR-209ENST00000558528 PLP2Q04941 152 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 PDZK1IP1Q13113 114 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 CDK5R1Q15078 307 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ETFDHQ16134 617 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 CNPY1Q3B7I2 92 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ZNF684Q5T5D7 378 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 OR2G6Q5TZ20 316 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 LIPNQ5VXI9 398 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 LIPKQ5VXJ0 399 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 FBXW9Q5XUX1 488 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 HIST2H2BDQ6DRA6 164 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 DMKNQ6E0U4 476 aaPredicted RBP4.43□□□□□ -1.7
LDLR-209ENST00000558528 OR7E24Q6IFN5 339 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 TMEM53Q6P2H8 277 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ZNF585AQ6P3V2 769 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 CD200R1LQ6Q8B3 271 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ARL9Q6T311 187 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 UNQ6126/PRO20091Q6UXV3 157 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 B3GLCTQ6Y288 498 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ZNF627Q7L945 461 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 SLC16A14Q7RTX9 510 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 DCXRQ7Z4W1 244 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 C1orf174Q8IYL3 243 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 UBE2J2Q8N2K1 259 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 GCSAMQ8N6F7 178 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ZNF485Q8NCK3 441 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 OR5AK2Q8NH90 309 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 FAM57AQ8TBR7 257 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 Q8TCH9 128 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ABHD3Q8WU67 409 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 RNF133Q8WVZ7 376 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 EXTL1Q92935 676 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 SLC25A28Q96A46 364 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 TMEM18Q96B42 140 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 C12orf43Q96C57 262 aaKnown RBP4.43□□□□□ -1.7
LDLR-209ENST00000558528 SMIM19Q96E16 107 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 PELI1Q96FA3 418 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 OPALINQ96PE5 141 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 TAAR6Q96RI8 345 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 TSC22D3Q99576 134 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ZNF649Q9BS31 505 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 RHNO1Q9BSD3 238 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 MED18Q9BUE0 208 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 TPPP3Q9BW30 176 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 TM2D2Q9BX73 214 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 HDHD2Q9H0R4 259 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 RBM38Q9H0Z9 239 aaKnown RBP4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms