RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TMEM225BP0DP42 221 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 FCGR2AP12318 317 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 HLA-GP17693 338 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 MMP16P51512 607 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 POLR2GP62487 172 aaKnown RBP eCLIP10.85□□□□□ -0.67
LDLR-205ENST00000557933 MYBPHQ13203 477 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 PCK2Q16822 640 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 ZNF343Q6P1L6 599 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 MEX3BQ6ZN04 569 aaKnown RBP10.85□□□□□ -0.67
LDLR-205ENST00000557933 P4HA3Q7Z4N8 544 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 LYZL2Q7Z4W2 148 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 POC1AQ8NBT0 407 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 OR2AJ1Q8NGZ0 328 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 EDARADDQ8WWZ3 215 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 C2orf50Q96LR7 162 aa10.85□□□□□ -0.67
LDLR-205ENST00000557933 MYOZ1Q9NP98 299 aaPredicted RBP10.85□□□□□ -0.67
LDLR-205ENST00000557933 OR5H15A6NDH6 313 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 C19orf67A6NJJ6 358 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 GDF9O60383 454 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 CLN5O75503 358 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 FOSL2P15408 326 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 LAP3P28838 519 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 GABRA4P48169 554 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 PHF19Q5T6S3 580 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 OGFOD3Q6PK18 319 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 PLXDC2Q6UX71 529 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 TMEM182Q6ZP80 229 aaPredicted RBP10.84□□□□□ -0.67
LDLR-205ENST00000557933 FAAP24Q9BTP7 215 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 WFDC1Q9HC57 220 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 SMCO4Q9NRQ5 59 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 TMEM127O75204 238 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 RPS2P15880 293 aaKnown RBP10.84□□□□□ -0.67
LDLR-205ENST00000557933 YPEL5P62699 121 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 KISS1Q15726 138 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 GGNBP1Q5YKI7 109 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 SMIM8Q96KF7 97 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 IER2Q9BTL4 223 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 OR10A2Q9H208 303 aa10.84□□□□□ -0.67
LDLR-205ENST00000557933 CFAP47Q6ZTR5 3102 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 UMAD1C9J7I0 102 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 NUDT21O43809 227 aaKnown RBP10.83□□□□□ -0.68
LDLR-205ENST00000557933 ISG15P05161 165 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 HOXC4P09017 264 aaPredicted RBP10.83□□□□□ -0.68
LDLR-205ENST00000557933 MDKP21741 143 aaPredicted RBP10.83□□□□□ -0.68
LDLR-205ENST00000557933 FBLP22087 321 aaKnown RBP10.83□□□□□ -0.68
LDLR-205ENST00000557933 CAMLGP49069 296 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 C10orf91Q5T1B1 145 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 FNDC9Q8TBE3 224 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 FAM213BQ8TBF2 198 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 TCEAL3Q969E4 200 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 MAGT1Q9H0U3 335 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 MMP17Q9ULZ9 603 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 WIF1Q9Y5W5 379 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 FAM230AA0A1W2PPH8 454 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 QDPRP09417 244 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 CCL20P78556 96 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 CYCSP99999 105 aaKnown RBP10.83□□□□□ -0.68
LDLR-205ENST00000557933 TMEM156Q8N614 296 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 SLC38A9Q8NBW4 561 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 OR9K2Q8NGE7 335 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 OR52M1Q8NGK5 317 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 GPR173Q9NS66 373 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 B3GAT1Q9P2W7 334 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 B3GALT5Q9Y2C3 310 aa10.83□□□□□ -0.68
LDLR-205ENST00000557933 TRBV6-7A0A0A0MS04 114 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 ZNF850A8MQ14 1090 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 ONECUT2O95948 504 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 OR8U8P0C7N1 319 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 CFPP27918 469 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 RPS10P46783 165 aaKnown RBP10.82□□□□□ -0.68
LDLR-205ENST00000557933 STARD6P59095 220 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 UBE2V2Q15819 145 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 GUK1Q16774 197 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 BTNL8Q6UX41 500 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 IL34Q6ZMJ4 242 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 SULF2Q8IWU5 870 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 KCNG3Q8TAE7 436 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 THRSPQ92748 146 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 ZNF837Q96EG3 531 aaPredicted RBP10.82□□□□□ -0.68
LDLR-205ENST00000557933 RHOVQ96L33 236 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 AQP10Q96PS8 301 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 RAB18Q9NP72 206 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 CHST11Q9NPF2 352 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 PLEKHJ1Q9NW61 149 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 ZMAT5Q9UDW3 170 aaKnown RBP10.82□□□□□ -0.68
LDLR-205ENST00000557933 EML6Q6ZMW3 1958 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 C5orf52A6NGY3 159 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 RHPN2P1A8MT19 583 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 MFNGO00587 321 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 MSTNO14793 375 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 OR5AC1P0C628 307 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 GSK3AP49840 483 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 PIGPP57054 158 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 TAS2R31P59538 309 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 RNF4P78317 190 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 GABREP78334 506 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 CFHR1Q03591 330 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 ECH1Q13011 328 aa10.82□□□□□ -0.68
LDLR-205ENST00000557933 TMEM176BQ3YBM2 270 aaPredicted RBP10.82□□□□□ -0.68
LDLR-205ENST00000557933 DNM1P34Q6PK57 102 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms