RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ZNF222Q9UK12 451 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 SLC22A13Q9Y226 551 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 PQLC2LA1A4F0 135 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 J3QT63 122 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 MAGEB4O15481 346 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 NDUFB3O43676 98 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 TOX4O94842 621 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 MPZP25189 248 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 IL13RA1P78552 427 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 CDONQ4KMG0 1287 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 LRRC10Q5BKY1 277 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 CEP78Q5JTW2 689 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 PLCXD3Q63HM9 321 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 C12orf54Q6X4T0 127 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 KCTD20Q7Z5Y7 419 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 CBR4Q8N4T8 237 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 FAM216BQ8N7L0 139 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 YIPF7Q8N8F6 280 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 POC1AQ8NBT0 407 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 OR10H4Q8NGA5 316 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 ST8SIA4Q92187 359 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 RORBQ92753 470 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 SEH1LQ96EE3 360 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 GAFA1Q96PS6 74 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 DCTN5Q9BTE1 182 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 C9orf16Q9BUW7 83 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 CNTD2Q9H8S5 307 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 NOX4Q9NPH5 578 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 POLDIP2Q9Y2S7 368 aa13.25□□□□□ -0.29
CCDC88C-209ENST00000554872 A0A1B0GVI7 797 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 A0A1B0GW55 424 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 SNTNA6NMZ2 147 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 OR2AT4A6NND4 320 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 AKR7A2O43488 359 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 RHBDL1O75783 438 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 SFTPBP07988 381 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 UBCP0CG48 685 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 DUX4L2P0CJ85 424 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 DUX4L3P0CJ86 424 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 DUX4L4P0CJ87 422 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 DUX4L5P0CJ88 424 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 DUX4L6P0CJ89 424 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 DUX4L7P0CJ90 424 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 PGA5P0DJD9 388 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 HKR1P10072 659 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 GLRA1P23415 457 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 ATP6V1E1P36543 226 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 ZNF85Q03923 595 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 BAMBIQ13145 260 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 FDX2Q6P4F2 183 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 DUX4L9Q6RFH8 374 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 C1orf122Q6ZSJ8 110 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 MOB3CQ70IA8 216 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 PQLC1Q8N2U9 271 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 GCDHQ92947 438 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 RNF166Q96A37 237 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 SDSLQ96GA7 329 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 RASSF4Q9H2L5 321 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 UNKLQ9H9P5 680 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 S100A14Q9HCY8 104 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 DUX4Q9UBX2 424 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 GTF2A1LQ9UNN4 478 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 PCDHGB1Q9Y5G3 927 aa13.24□□□□□ -0.29
CCDC88C-209ENST00000554872 IGKV1D-17A0A075B6S4 117 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 CENPVL3A0A0U1RRI6 287 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 MPZL2O60487 215 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 ENTPD6O75354 484 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 GABRB1P18505 474 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 ELF3P78545 371 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 SLC9A3R2Q15599 337 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 SMIM21Q3B7S5 101 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 HAGHLQ6PII5 290 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 FAM220AQ7Z4H9 259 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 CMTM4Q8IZR5 234 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 TMEM86BQ8N661 226 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 GATAD2BQ8WXI9 593 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 SLC25A28Q96A46 364 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 TMIGD2Q96BF3 282 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 MBOAT4Q96T53 435 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 TBX5Q99593 518 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 NRIP2Q9BQI9 281 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 PCGF1Q9BSM1 259 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 PKIBQ9C010 78 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 HES4Q9HCC6 221 aa13.23□□□□□ -0.29
CCDC88C-209ENST00000554872 IGHV3OR16-10A0A075B7F0 116 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 TRBV23-1A0A0A0MS06 115 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 IGHV1-69DA0A0B4J2H0 117 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 ANKRD61A6NGH8 418 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 SYT7O43581 403 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 RPP14O95059 124 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 APOL3O95236 402 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 IGHV1-69P01742 117 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 ISG15P05161 165 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 PSG2P11465 335 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 FOXL1Q12952 345 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 DGUOKQ16854 277 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 BRD3OSQ6XYD6 125 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 ACP7Q6ZNF0 438 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 PRSS35Q8N3Z0 413 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 OR5T2Q8NGG2 359 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms