RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 UTP20O75691 2785 aaKnown RBP2.12□□□□□ -2.07
SCFD1-210ENST00000553693 UBR5O95071 2799 aaPredicted RBP2.12□□□□□ -2.07
SCFD1-210ENST00000553693 PCNX2A6NKB5 2137 aa2.12□□□□□ -2.07
SCFD1-210ENST00000553693 TEP1Q99973 2627 aaKnown RBP2.12□□□□□ -2.07
SCFD1-210ENST00000553693 PHLPP2Q6ZVD8 1323 aa2.12□□□□□ -2.07
SCFD1-210ENST00000553693 APC2O95996 2303 aa2.12□□□□□ -2.07
SCFD1-210ENST00000553693 SCN2AQ99250 2005 aa2.12□□□□□ -2.07
SCFD1-210ENST00000553693 SPAG17Q6Q759 2223 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 URB1O60287 2271 aaKnown RBP2.11□□□□□ -2.07
SCFD1-210ENST00000553693 A0A0G2JLM5 398 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 A0A0G2JN53 185 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 LOC100653049A0A140TA62 436 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 A0A1W2PRF3 423 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 A0A1W2PRM7 423 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 RAB19A4D1S5 217 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 PRSS37A4D1T9 235 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 SYCE1LA8MT33 242 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 POLR1CO15160 346 aaPredicted RBP2.11□□□□□ -2.07
SCFD1-210ENST00000553693 NUPL2O15504 423 aaKnown RBP2.11□□□□□ -2.07
SCFD1-210ENST00000553693 RAD51CO43502 376 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 NEMFO60524 1076 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 SLC19A2O60779 497 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 TNFSF13O75888 250 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 KRT34O76011 436 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 IGLV3-19P01714 112 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 SERPINE2P07093 398 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 OR4Q2P0C623 313 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 CHTF8P0CG12 524 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 CT45A6P0DMU7 189 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 CT45A5P0DMU8 189 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 CT45A7P0DMV0 189 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 GGT1P19440 569 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 RAB3BP20337 219 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 CPN2P22792 545 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 RFC3P40938 356 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 CYB561P49447 251 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 PSMC5P62195 406 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 LCN2P80188 198 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 SEMG2Q02383 582 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 ZSCAN26Q16670 478 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 FAM83EQ2M2I3 478 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 TRMT5Q32P41 509 aaKnown RBP2.11□□□□□ -2.07
SCFD1-210ENST00000553693 ZNF829Q3KNS6 432 aaPredicted RBP2.11□□□□□ -2.07
SCFD1-210ENST00000553693 CT45A1Q5HYN5 189 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 ANKRD22Q5VYY1 191 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 Q6ZSR3 168 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 PRSS41Q7RTY9 318 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 HDDC2Q7Z4H3 204 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 CAMK2N1Q7Z7J9 78 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 UNC93AQ86WB7 457 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 VKORC1L1Q8N0U8 176 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 FBXO36Q8NEA4 188 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 OR51L1Q8NGJ5 315 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 OR2L8Q8NGY9 312 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 OR52E5Q8NH55 327 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 CT45A3Q8NHU0 189 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 NUBPLQ8TB37 319 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 RAB1CQ92928 201 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 NAT6Q93015 286 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 ISOC2Q96AB3 205 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 NTAN1Q96AB6 310 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 C19orf60Q96EN9 201 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 CEP170P1Q96L14 293 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 TSSK3Q96PN8 268 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 NAPGQ99747 312 aaPredicted RBP2.11□□□□□ -2.07
SCFD1-210ENST00000553693 TRIM4Q9C037 500 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 LINC00597Q9H2U6 94 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 ZDHHC4Q9NPG8 344 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 XPNPEP1Q9NQW7 623 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 AGPAT3Q9NRZ7 376 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 DEC1Q9P2X7 70 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 YARS2Q9Y2Z4 477 aaKnown RBP2.11□□□□□ -2.07
SCFD1-210ENST00000553693 KPTNQ9Y664 436 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 COL5A1P20908 1838 aaPredicted RBP2.11□□□□□ -2.07
SCFD1-210ENST00000553693 NUP205Q92621 2012 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 ANKRD17O75179 2603 aaKnown RBP2.11□□□□□ -2.07
SCFD1-210ENST00000553693 KIF26AQ9ULI4 1882 aaPredicted RBP2.11□□□□□ -2.07
SCFD1-210ENST00000553693 ATG2BQ96BY7 2078 aa2.11□□□□□ -2.07
SCFD1-210ENST00000553693 MUC22E2RYF6 1773 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-210ENST00000553693 PTPRBP23467 1997 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 MYH9P35579 1960 aaKnown RBP2.1□□□□□ -2.07
SCFD1-210ENST00000553693 THADAQ6YHU6 1953 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 PCDH15Q96QU1 1955 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 TNRC6BQ9UPQ9 1833 aaKnown RBP2.1□□□□□ -2.07
SCFD1-210ENST00000553693 ACACAQ13085 2346 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 LOC100506127A0A0U1RQW1 187 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 SMKR1H3BMG3 65 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 PEX7O00628 323 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 SLC9A3R1O14745 358 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-210ENST00000553693 RRP8O43159 456 aaKnown RBP2.1□□□□□ -2.07
SCFD1-210ENST00000553693 TRAPPC3O43617 180 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 MPDU1O75352 247 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 SRP72O76094 671 aaKnown RBP2.1□□□□□ -2.07
SCFD1-210ENST00000553693 SLC25A14O95258 325 aaPredicted RBP2.1□□□□□ -2.07
SCFD1-210ENST00000553693 TDP2O95551 362 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 ETHE1O95571 254 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 FABP3P05413 133 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 CRYGCP07315 174 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 SMIM10L1P0DMW3 83 aa2.1□□□□□ -2.07
SCFD1-210ENST00000553693 HLA-EP13747 358 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms