RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ZNF717Q9BY31 904 aaPredicted RBP2.33□□□□□ -2.04
VPS29-205ENST00000548539 ING2Q9H160 280 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 STMN4Q9H169 189 aaPredicted RBP2.33□□□□□ -2.04
VPS29-205ENST00000548539 ZSCAN16Q9H4T2 348 aaPredicted RBP2.33□□□□□ -2.04
VPS29-205ENST00000548539 HAUS4Q9H6D7 363 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 PLEKHF2Q9H8W4 249 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 RAB23Q9ULC3 237 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 ORC6Q9Y5N6 252 aa2.33□□□□□ -2.04
VPS29-205ENST00000548539 AQRO60306 1485 aaKnown RBP eCLIP2.33□□□□□ -2.043e-6■■■■□ 23.7
VPS29-205ENST00000548539 IGHV6-1A0A0B4J1U7 121 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 GSTTP1A0A1W2PQM5 241 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 ISPDA4D126 451 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 CENPBD1B2RD01 187 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 PRMT5O14744 637 aaPredicted RBP2.32□□□□□ -2.04
VPS29-205ENST00000548539 NDUFS5O43920 106 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 SC5DO75845 299 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 SCO1O75880 301 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 ZNF14P17017 642 aaPredicted RBP2.32□□□□□ -2.04
VPS29-205ENST00000548539 PSMB5P28074 263 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 PRSS3P35030 304 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 ARR3P36575 388 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 ETV1P50549 477 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 ADIGQ0VDE8 80 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 LAMTOR4Q0VGL1 99 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 HHATQ5VTY9 493 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 AADACL4Q5VUY2 407 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 DEGS2Q6QHC5 323 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 STK40Q8N2I9 435 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 SLC25A29Q8N8R3 303 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 GATSQ8NAP1 163 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 RMI2Q96E14 147 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 WDR34Q96EX3 536 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 ZFP3Q96NJ6 502 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 CSNK1G1Q9HCP0 422 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 VCX3AQ9NNX9 186 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 CA10Q9NS85 328 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 DDIT4Q9NX09 232 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 STMN3Q9NZ72 180 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 ZNF229Q9UJW7 825 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 CFL2Q9Y281 166 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 STK38LQ9Y2H1 464 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 RBMX2Q9Y388 322 aaKnown RBP2.32□□□□□ -2.04
VPS29-205ENST00000548539 TSPOAP1O95153 1857 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 PCM1Q15154 2024 aa2.32□□□□□ -2.04
VPS29-205ENST00000548539 TRIOBPQ9H2D6 2365 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 ANKRD20A5PA0PJZ0 165 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 CEACAM18A8MTB9 384 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 A8MUU9 505 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 DHRS3O75911 302 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 OR5AL1P0C617 328 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 CCNOP22674 350 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 PSMB2P49721 201 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 MAD2L1BPQ15013 274 aaPredicted RBP2.31□□□□□ -2.04
VPS29-205ENST00000548539 PMVKQ15126 192 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 TTC32Q5I0X7 151 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 FAM222AQ5U5X8 452 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 PDPNQ86YL7 162 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 SYS1Q8N2H4 156 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 SPANXA2-OT1Q8N9U9 137 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 OR4D6Q8NGJ1 314 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 OR6N2Q8NGY6 317 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 ZNF420Q8TAQ5 688 aaPredicted RBP2.31□□□□□ -2.04
VPS29-205ENST00000548539 LRRC20Q8TCA0 184 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 SMARCD1Q96GM5 515 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 ADTRPQ96IZ2 230 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 COA1Q9GZY4 146 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 XKR8Q9H6D3 395 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 AGPAT3Q9NRZ7 376 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 WIF1Q9Y5W5 379 aa2.31□□□□□ -2.04
VPS29-205ENST00000548539 IGKV1-6A0A0C4DH72 117 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 A0A0G2JMP0 313 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 A0A0X1KG70 313 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 RAB19A4D1S5 217 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 M0R1B8 84 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 PSMD11O00231 422 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 RNF113AO15541 343 aaKnown RBP2.3□□□□□ -2.04
VPS29-205ENST00000548539 SPOPO43791 374 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 IGKV1-39P01597 117 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 IGKV1D-16P01601 117 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 IGKV1D-39P04432 117 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 NTF3P20783 257 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 RGS6P49758 472 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 ERFP50548 548 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 TNNC1P63316 161 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 FUT5Q11128 374 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 DNLZQ5SXM8 178 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 APOBEC3HQ6NTF7 200 aaKnown RBP2.3□□□□□ -2.04
VPS29-205ENST00000548539 SETD3Q86TU7 594 aaPredicted RBP2.3□□□□□ -2.04
VPS29-205ENST00000548539 BBS7Q8IWZ6 715 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 ORMDL3Q8N138 153 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 CA13Q8N1Q1 262 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 ATPAF2Q8N5M1 289 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 TRIML2Q8N7C3 387 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 SLC35G3Q8N808 338 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 ST20-AS1Q8NBB2 130 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 OR2M7Q8NG81 312 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 OR5M1Q8NGP8 315 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 NT5CQ8TCD5 201 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 ZFAND1Q8TCF1 268 aa2.3□□□□□ -2.04
VPS29-205ENST00000548539 DEDD2Q8WXF8 326 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms