RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PCNX1Q96RV3 2341 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 ANAPC1Q9H1A4 1944 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 A0A1W2PQM1 296 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 LEUTXA8MZ59 168 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 ZNF732B4DXR9 585 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 NPIPB9F8W1W9 429 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 DEGS1O15121 323 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 IGKV3-11P04433 115 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 NKX2-1P43699 371 aaPredicted RBP13.86□□□□□ -0.19
CUX1-211ENST00000546411 GAS1P54826 345 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 SSBP1Q04837 148 aaKnown RBP13.86□□□□□ -0.19
CUX1-211ENST00000546411 TFAP2EQ6VUC0 442 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 PRSS42Q7Z5A4 293 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 CARFQ8N187 725 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 OR2M3Q8NG83 312 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 OR56B2PQ8NGI1 322 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 PIGMQ9H3S5 423 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 IGLV1-36A0A0B4J1U3 117 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 A0A0G2JK05 382 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 COL13A1Q5TAT6 717 aaPredicted RBP13.85□□□□□ -0.19
CUX1-211ENST00000546411 FAM122BQ7Z309 247 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 TMEM127O75204 238 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 AQP8O94778 261 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 MPC2O95563 127 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 TBPP20226 339 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 PLPPR5Q32ZL2 321 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 TMEM255AQ5JRV8 349 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 Q6ZRG5 221 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 GPX8Q8TED1 209 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 PPP1R3CQ9UQK1 317 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 CEBPZOSA8MTT3 80 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 RRASP10301 218 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 THBS4P35443 961 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 FABP6P51161 128 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 ADAD2Q8NCV1 583 aaKnown RBP13.85□□□□□ -0.19
CUX1-211ENST00000546411 C2orf50Q96LR7 162 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 SLC25A31Q9H0C2 315 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 ZNF629Q9UEG4 869 aaPredicted RBP13.85□□□□□ -0.19
CUX1-211ENST00000546411 MPDZO75970 2070 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 PHF3Q92576 2039 aaKnown RBP13.85□□□□□ -0.19
CUX1-211ENST00000546411 OR6C6A6NF89 314 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 SERPINE3A8MV23 424 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 MS4A18H0YCH9 400 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 IFNA17P01571 189 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 OR1C1Q15619 314 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 MS4A18Q3C1V0 323 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 TMEM182Q6ZP80 229 aaPredicted RBP13.85□□□□□ -0.19
CUX1-211ENST00000546411 PCDHB10Q9UN67 800 aa13.85□□□□□ -0.19
CUX1-211ENST00000546411 PRR32B1ATL7 298 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 SIGLEC5O15389 551 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 BCL2L11O43521 198 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 CLDN1O95832 211 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 SIGLEC14Q08ET2 396 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 OR8G2PQ6IF36 304 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 ZNF808Q8N4W9 903 aaPredicted RBP13.84□□□□□ -0.19
CUX1-211ENST00000546411 DYRK2Q92630 601 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 KIRREL1Q96J84 757 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 HDHD3Q9BSH5 251 aaPredicted RBP13.84□□□□□ -0.19
CUX1-211ENST00000546411 DUSP15Q9H1R2 295 aaPredicted RBP13.84□□□□□ -0.19
CUX1-211ENST00000546411 PRMT8Q9NR22 394 aaPredicted RBP13.84□□□□□ -0.19
CUX1-211ENST00000546411 A0A0U1RQK1 487 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 SSSCA1O60232 199 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 EDDM3BP56851 147 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 OR2W3Q7Z3T1 314 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 CXorf67Q86X51 503 aaPredicted RBP13.84□□□□□ -0.19
CUX1-211ENST00000546411 C2CD4CQ8TF44 421 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 SFT2D1Q8WV19 159 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 ZFP64Q9NPA5 681 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 LHX6Q9UPM6 363 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 URGCP-MRPS24S4R325 110 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 CCDC187A0A096LP49 1063 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 CST7O76096 145 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 SMUG1Q53HV7 270 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 C1orf210Q8IVY1 113 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 TMEM178AQ8NBL3 297 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 OR5M9Q8NGP3 310 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 OR10J5Q8NHC4 309 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 ZNF285Q96NJ3 590 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 MS4A7Q9GZW8 240 aaPredicted RBP13.84□□□□□ -0.19
CUX1-211ENST00000546411 BIN3Q9NQY0 253 aa13.84□□□□□ -0.19
CUX1-211ENST00000546411 TXNDC12O95881 172 aa13.83□□□□□ -0.19
CUX1-211ENST00000546411 RPS11P62280 158 aaKnown RBP eCLIP13.83□□□□□ -0.19
CUX1-211ENST00000546411 MICBQ29980 383 aa13.83□□□□□ -0.19
CUX1-211ENST00000546411 DRAM2Q6UX65 266 aa13.83□□□□□ -0.19
CUX1-211ENST00000546411 LHFPL2Q6ZUX7 228 aa13.83□□□□□ -0.19
CUX1-211ENST00000546411 KCNE4Q8WWG9 221 aa13.83□□□□□ -0.19
CUX1-211ENST00000546411 ZNF426Q9BUY5 554 aa13.83□□□□□ -0.19
CUX1-211ENST00000546411 KLK13Q9UKR3 277 aa13.83□□□□□ -0.19
CUX1-211ENST00000546411 RNF150Q9ULK6 438 aa13.83□□□□□ -0.19
CUX1-211ENST00000546411 KCNK7Q9Y2U2 307 aa13.83□□□□□ -0.19
CUX1-211ENST00000546411 TRBV5-5A0A0J9YX44 114 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 ZNF816-ZNF321PA0A0X1KG74 233 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 LOC101059948A0A1B0GTJ6 334 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 RPS10-NUDT3A0A1W2PQS6 291 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 RAMP1O60894 148 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 CPN1P15169 458 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 CXCL2P19875 107 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 RPS10P46783 165 aaKnown RBP13.83□□□□□ -0.2
CUX1-211ENST00000546411 SCAND1P57086 179 aa13.83□□□□□ -0.2
CUX1-211ENST00000546411 IGLV3-21P80748 117 aaPredicted RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms