RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 CLDN34H7C241 214 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 RAC2P15153 192 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 ARG2P78540 354 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 NAAAQ02083 359 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 MICBQ29980 383 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 ASB16Q96NS5 453 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 AMELYQ99218 206 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 MYLKQ15746 1914 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 A0A1W2PPC1 479 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 IGHG1P01857 330 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 FPR2P25090 351 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 SCAND1P57086 179 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 CTAG1AP78358 180 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 OR8G1Q15617 311 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 ZNRF4Q8WWF5 429 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 VN1R1Q9GZP7 353 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 PBOV1Q9GZY1 135 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 PARP11Q9NR21 331 aa12.7□□□□□ -0.38
LIMS1-215ENST00000544547 PIGBOS1A0A0B4J2F0 54 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 RBFOX3A6NFN3 312 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 OTOL1A6NHN0 477 aaPredicted RBP12.69□□□□□ -0.38
LIMS1-215ENST00000544547 EFSO43281 561 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 CTSVO60911 334 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 SCRG1O75711 98 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 CTLA4P16410 223 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 RPS11P62280 158 aaKnown RBP eCLIP12.69□□□□□ -0.38
LIMS1-215ENST00000544547 RPS4XP62701 263 aaKnown RBP12.69□□□□□ -0.38
LIMS1-215ENST00000544547 C9orf135Q5VTT2 229 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 VN1R4Q7Z5H5 301 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 ASB5Q8WWX0 329 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 ZNF681Q96N22 645 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 ZCCHC4Q9H5U6 513 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 KIR3DX1Q9H7L2 352 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 POMT1Q9Y6A1 747 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 TRIOBPQ9H2D6 2365 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 ST8SIA5O15466 376 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 KLK2P20151 261 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 SLC25A1P53007 311 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 EMC4Q5J8M3 183 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 ZNF343Q6P1L6 599 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 DOCK6Q96HP0 2047 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 GPR87Q9BY21 358 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 GPR173Q9NS66 373 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 LHX6Q9UPM6 363 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 TK1P04183 234 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 CD74P04233 296 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 APLNRP35414 380 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 LY6G6FQ5SQ64 297 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 PPP1R35Q8TAP8 253 aa12.69□□□□□ -0.38
LIMS1-215ENST00000544547 A0A1W2PPE3 182 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 MEX3AA1L020 520 aaKnown RBP12.68□□□□□ -0.38
LIMS1-215ENST00000544547 GSTP1P09211 210 aaKnown RBP12.68□□□□□ -0.38
LIMS1-215ENST00000544547 PCK2Q16822 640 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 DRAM2Q6UX65 266 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 DBX2Q6ZNG2 339 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 Q7L0L9 218 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 MKXQ8IYA7 352 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 LYRM4Q9HD34 91 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 A0A1W2PPV9 198 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 M0R143 59 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 DDAH2O95865 285 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 HIST1H1DP16402 221 aaKnown RBP12.68□□□□□ -0.38
LIMS1-215ENST00000544547 CDX1P47902 265 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-215ENST00000544547 ZNF787Q6DD87 383 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 BRICD5Q6PL45 260 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 MRPL24Q96A35 216 aaKnown RBP12.68□□□□□ -0.38
LIMS1-215ENST00000544547 METTL9Q9H1A3 318 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 CNOT1A5YKK6 2376 aaKnown RBP12.68□□□□□ -0.38
LIMS1-215ENST00000544547 SULT1A2P50226 295 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 GABREP78334 506 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 EFNB1P98172 346 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 PDCD1Q15116 288 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 OR8G2PQ6IF36 304 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 UNQ9370/PRO34162Q6UXP9 181 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 CNEP1R1Q8N9A8 125 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 SLC38A9Q8NBW4 561 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 OR10C1Q96KK4 312 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 NECAP2Q9NVZ3 263 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 A8MVM7 634 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 GCH1P30793 250 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 CD200P41217 278 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 KIR3DL2P43630 455 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 POLR2HP52434 150 aaKnown RBP12.68□□□□□ -0.38
LIMS1-215ENST00000544547 ERVS71-1P61550 626 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 MESTQ5EB52 335 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 ZNF880Q6PDB4 577 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 TOMM20LQ6UXN7 152 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 OR13H1Q8NG92 308 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 OR51H1Q8NH63 302 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 PIGCQ92535 297 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 BSCL2Q96G97 398 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-215ENST00000544547 VPS25Q9BRG1 176 aa12.68□□□□□ -0.38
LIMS1-215ENST00000544547 MOSPD3O75425 235 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 PTBP3O95758 552 aaKnown RBP12.67□□□□□ -0.38
LIMS1-215ENST00000544547 NGFRP08138 427 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 NOVA1P51513 510 aaKnown RBP12.67□□□□□ -0.38
LIMS1-215ENST00000544547 EFNA3P52797 238 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 NCR3LG1Q68D85 454 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 SPRED2Q7Z698 418 aa12.67□□□□□ -0.38
LIMS1-215ENST00000544547 RABEPKQ7Z6M1 372 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms