RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FAM216AQ8WUB2 273 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 AQP3Q92482 292 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 RNF166Q96A37 237 aaPredicted RBP12.24□□□□□ -0.45
USP28-204ENST00000537642 RNFT2Q96EX2 444 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 GPR173Q9NS66 373 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 GMPPBQ9Y5P6 360 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 DHRS7CA6NNS2 312 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 DLGAP1O14490 977 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 ECDO95905 644 aaPredicted RBP12.23□□□□□ -0.45
USP28-204ENST00000537642 GABRB1P18505 474 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 GLRA1P23415 457 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 UBA52P62987 128 aaKnown RBP12.23□□□□□ -0.45
USP28-204ENST00000537642 TP53I3Q53FA7 332 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 HAGHLQ6PII5 290 aaPredicted RBP12.23□□□□□ -0.45
USP28-204ENST00000537642 ZNF788Q6ZQV5 615 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 ZBTB49Q6ZSB9 765 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 PRSS35Q8N3Z0 413 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 ANGPTL6Q8NI99 470 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 C1orf147Q96MC9 270 aaPredicted RBP12.23□□□□□ -0.45
USP28-204ENST00000537642 WDFY2Q96P53 400 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 GAFA1Q96PS6 74 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 TBX15Q96SF7 602 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 PCGF1Q9BSM1 259 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 DNTTIP1Q9H147 329 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 ACOXLQ9NUZ1 547 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.23□□□□□ -0.45
USP28-204ENST00000537642 NLKQ9UBE8 527 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 RPUSD1Q9UJJ7 312 aaKnown RBP12.23□□□□□ -0.45
USP28-204ENST00000537642 GNG8Q9UK08 70 aa12.23□□□□□ -0.45
USP28-204ENST00000537642 A0A1B0GVI7 797 aa12.22□□□□□ -0.45
USP28-204ENST00000537642 H3BSH0 61 aa12.22□□□□□ -0.45
USP28-204ENST00000537642 NDUFB3O43676 98 aa12.22□□□□□ -0.45
USP28-204ENST00000537642 TOX4O94842 621 aa12.22□□□□□ -0.45
USP28-204ENST00000537642 KIR3DL2P43630 455 aa12.22□□□□□ -0.45
USP28-204ENST00000537642 IKZF1Q13422 519 aa12.22□□□□□ -0.45
USP28-204ENST00000537642 RBMS3Q6XE24 437 aaKnown RBP12.22□□□□□ -0.45
USP28-204ENST00000537642 BRD3OSQ6XYD6 125 aa12.22□□□□□ -0.45
USP28-204ENST00000537642 FAM220AQ7Z4H9 259 aa12.22□□□□□ -0.45
USP28-204ENST00000537642 ENTHD1Q8IYW4 607 aa12.22□□□□□ -0.45
USP28-204ENST00000537642 LY6G5BQ8NDX9 201 aa12.22□□□□□ -0.45
USP28-204ENST00000537642 ZNF671Q8TAW3 534 aa12.22□□□□□ -0.45
USP28-204ENST00000537642 SIRPDQ9H106 197 aa12.22□□□□□ -0.45
USP28-204ENST00000537642 EXOGQ9Y2C4 368 aaKnown RBP12.22□□□□□ -0.45
USP28-204ENST00000537642 IGKV1D-17A0A075B6S4 117 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 PQLC2LA1A4F0 135 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 DNAJC9-AS1A6NH13 148 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 NKX6-3A6NJ46 265 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 OR2AT4A6NND4 320 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 J3QT63 122 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 SYT7O43581 403 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 SYNGR1O43759 233 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 BAG2O95816 211 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 ACAA1P09110 424 aaPredicted RBP12.21□□□□□ -0.45
USP28-204ENST00000537642 PSG2P11465 335 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 HAAOP46952 286 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 ARF6P62330 175 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 ACTG1P63261 375 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 ACTC1P68032 377 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 ACTA1P68133 377 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 DGUOKQ16854 277 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 CDONQ4KMG0 1287 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 LRRC10Q5BKY1 277 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 GPR157Q5UAW9 335 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 METTL11BQ5VVY1 283 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 POC1AQ8NBT0 407 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 RHOXF1Q8NHV9 184 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 TMIGD2Q96BF3 282 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 LGALS12Q96DT0 336 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 ZNF488Q96MN9 340 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 DUX5Q96PT3 197 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 CNTD2Q9H8S5 307 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 FAM118AQ9NWS6 357 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 ZNF222Q9UK12 451 aa12.21□□□□□ -0.45
USP28-204ENST00000537642 CENPVL3A0A0U1RRI6 287 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 LOC100130705A0A1B0GUX0 176 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 MDFIC2A0A1B0GVS7 189 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 LOC107986453A0A1B0GWG9 222 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 DAPL1A0PJW8 107 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 TMEM89A2RUT3 159 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 ANKRD61A6NGH8 418 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 SNTNA6NMZ2 147 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 GPR37O15354 613 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 SIGLEC5O15389 551 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 SLC16A6O15403 523 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 PGA5P0DJD9 388 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 PRTN3P24158 256 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 GABRA2P47869 451 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 OR12D2P58182 307 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 IL13RA1P78552 427 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 ZNF91Q05481 1191 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 BAMBIQ13145 260 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 RUSC1-AS1Q66K80 236 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 ACP7Q6ZNF0 438 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 KCTD20Q7Z5Y7 419 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 ZNF573Q86YE8 665 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 RDH10Q8IZV5 341 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 ACBD7Q8N6N7 88 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 OR2G2Q8NGZ5 317 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 MED30Q96HR3 178 aa12.2□□□□□ -0.46
USP28-204ENST00000537642 DCTN5Q9BTE1 182 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms