RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 OR51A4Q8NGJ6 313 aa11.97□□□□□ -0.49
NUP54-216ENST00000514901 OR5D14Q8NGL3 314 aa11.97□□□□□ -0.49
NUP54-216ENST00000514901 LRRC29Q8WV35 223 aa11.97□□□□□ -0.49
NUP54-216ENST00000514901 RPL3LQ92901 407 aaKnown RBP11.97□□□□□ -0.49
NUP54-216ENST00000514901 MSI2Q96DH6 328 aaKnown RBP11.97□□□□□ -0.49
NUP54-216ENST00000514901 ADAT3Q96EY9 351 aaPredicted RBP11.97□□□□□ -0.49
NUP54-216ENST00000514901 FGF23Q9GZV9 251 aaPredicted RBP11.97□□□□□ -0.49
NUP54-216ENST00000514901 PATZ1Q9HBE1 687 aaKnown RBP11.97□□□□□ -0.49
NUP54-216ENST00000514901 UBAP1Q9NZ09 502 aa11.97□□□□□ -0.49
NUP54-216ENST00000514901 DOCK11Q5JSL3 2073 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 OOEPA6NGQ2 149 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 PLPP2O43688 288 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 LMX1BO60663 402 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 MRPS14O60783 128 aaKnown RBP11.96□□□□□ -0.49
NUP54-216ENST00000514901 LALBAP00709 142 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 TGFAP01135 160 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 CD2P06729 351 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 MUC1P15941 1255 aaPredicted RBP11.96□□□□□ -0.49
NUP54-216ENST00000514901 ATF1P18846 271 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 EEF1B2P24534 225 aaKnown RBP11.96□□□□□ -0.49
NUP54-216ENST00000514901 IL2RGP31785 369 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 IRF3Q14653 427 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 MICBQ29980 383 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 YIF1BQ5BJH7 314 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 TEX36Q5VZQ5 186 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 XAF1Q6GPH4 301 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 DCDC5Q6ZRR9 648 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 PARP16Q8N5Y8 322 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 BOLLQ8N9W6 283 aaKnown RBP11.96□□□□□ -0.49
NUP54-216ENST00000514901 OR10AC1Q8NH08 325 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 TSEN15Q8WW01 171 aaKnown RBP11.96□□□□□ -0.49
NUP54-216ENST00000514901 GHSRQ92847 366 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 SPSB1Q96BD6 273 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 C12orf43Q96C57 262 aaKnown RBP11.96□□□□□ -0.49
NUP54-216ENST00000514901 TMEM246Q9BRR3 403 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 ZCCHC4Q9H5U6 513 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 PAK1IP1Q9NWT1 392 aaPredicted RBP11.96□□□□□ -0.49
NUP54-216ENST00000514901 POLDIP2Q9Y2S7 368 aa11.96□□□□□ -0.49
NUP54-216ENST00000514901 SIRT4Q9Y6E7 314 aaPredicted RBP11.96□□□□□ -0.49
NUP54-216ENST00000514901 CEACAM18A8MTB9 384 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 SRRM5B3KS81 715 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 J3QT63 122 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 FOXH1O75593 365 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 ZNF205O95201 554 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 MT-ND2P03891 347 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 ACAA1P09110 424 aaPredicted RBP11.95□□□□□ -0.5
NUP54-216ENST00000514901 OCM2P0CE71 109 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 OCMP0CE72 109 aaPredicted RBP11.95□□□□□ -0.5
NUP54-216ENST00000514901 PCMT1P22061 227 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 HAAOP46952 286 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 ATP1B3P54709 279 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 GABARAPL2P60520 117 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 GPR50Q13585 617 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 SPHARQ15513 63 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 FAM201AQ5SY85 155 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 FAM166AQ6J272 317 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 HAGHLQ6PII5 290 aaPredicted RBP11.95□□□□□ -0.5
NUP54-216ENST00000514901 NLRC3Q7RTR2 1065 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 DEFB108BQ8NET1 73 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 OR51F2Q8NH61 342 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 AQP3Q92482 292 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 BORCS8Q96FH0 119 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 PKIBQ9C010 78 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 CCDC90BQ9GZT6 254 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 METTL17Q9H7H0 456 aaPredicted RBP11.95□□□□□ -0.5
NUP54-216ENST00000514901 RASL12Q9NYN1 266 aa11.95□□□□□ -0.5
NUP54-216ENST00000514901 NSD1Q96L73 2696 aaPredicted RBP11.94□□□□□ -0.5
NUP54-216ENST00000514901 TRAV20A0A0B4J274 112 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 FAM230AA0A1W2PPH8 454 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 A8MV72 311 aaPredicted RBP11.94□□□□□ -0.5
NUP54-216ENST00000514901 FAM157AC9JC47 383 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 F5H0A9 414 aaPredicted RBP11.94□□□□□ -0.5
NUP54-216ENST00000514901 C3orf80F5H4A9 247 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 NOS1APO75052 506 aaPredicted RBP11.94□□□□□ -0.5
NUP54-216ENST00000514901 MSMBP08118 114 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 WNT2P09544 360 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 CELP19835 753 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 MPZP25189 248 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 RBMXP38159 391 aaKnown RBP11.94□□□□□ -0.5
NUP54-216ENST00000514901 RBP2P50120 134 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 DVL1P1P54792 670 aaPredicted RBP11.94□□□□□ -0.5
NUP54-216ENST00000514901 HNRNPA0Q13151 305 aaKnown RBP11.94□□□□□ -0.5
NUP54-216ENST00000514901 DMRTC1Q5HYR2 192 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 SFRP4Q6FHJ7 346 aaPredicted RBP11.94□□□□□ -0.5
NUP54-216ENST00000514901 LHFPL2Q6ZUX7 228 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 OR8B3Q8NGG8 313 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 SGCDQ92629 289 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 THRSPQ92748 146 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 NEIL1Q96FI4 390 aaPredicted RBP11.94□□□□□ -0.5
NUP54-216ENST00000514901 OR8B2Q96RD0 313 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 ISYNA1Q9NPH2 558 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 YAE1D1Q9NRH1 226 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 TMEM160Q9NX00 188 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 KCNS2Q9ULS6 477 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 LRCH1Q9Y2L9 728 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 LSM2Q9Y333 95 aaKnown RBP11.94□□□□□ -0.5
NUP54-216ENST00000514901 NIPBLQ6KC79 2804 aaeCLIP11.94□□□□□ -0.5
NUP54-216ENST00000514901 ABCA2Q9BZC7 2435 aa11.94□□□□□ -0.5
NUP54-216ENST00000514901 IGKV1-9A0A0C4DH69 117 aa11.93□□□□□ -0.5
NUP54-216ENST00000514901 TNFRSF13BO14836 293 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms