RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TENM1Q9UKZ4 2725 aa15.01□□□□□ -0.01
COL9A3-214ENST00000490398 SLC16A6O15403 523 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 SYNGR1O43759 233 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 MTRF1O75570 445 aaKnown RBP15□□□□□ -0.01
COL9A3-214ENST00000490398 CLIC3O95833 236 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 DBTP11182 482 aaKnown RBP15□□□□□ -0.01
COL9A3-214ENST00000490398 TGM4P49221 684 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 NPY4RP50391 375 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 HILS1P60008 231 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 IKZF1Q13422 519 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 SMN1Q16637 294 aaKnown RBP15□□□□□ -0.01
COL9A3-214ENST00000490398 DOK3Q7L591 496 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 BPIFB2Q8N4F0 458 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 SIGLECL1Q8N7X8 197 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 ZDHHC22Q8N966 263 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 ANGPTL6Q8NI99 470 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 ZNF418Q8TF45 676 aaPredicted RBP15□□□□□ -0.01
COL9A3-214ENST00000490398 STMN2Q93045 179 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 GAFA1Q96PS6 74 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 TBX15Q96SF7 602 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 ZNF649Q9BS31 505 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 CMYA5Q8N3K9 4069 aa15□□□□□ -0.01
COL9A3-214ENST00000490398 IGKV1D-17A0A075B6S4 117 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 TRAV40A0A0B4J280 105 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 LOC107986453A0A1B0GWG9 222 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 DAPL1A0PJW8 107 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 PQLC2LA1A4F0 135 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 OR5B21A6NL26 309 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 SYT7O43581 403 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 ENSAO43768 121 aaKnown RBP14.99□□□□□ -0.01
COL9A3-214ENST00000490398 WBP4O75554 376 aaKnown RBP14.99□□□□□ -0.01
COL9A3-214ENST00000490398 MMP9P14780 707 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 GLRA1P23415 457 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 RCN1Q15293 331 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 UBE2V2Q15819 145 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 ZSCAN26Q16670 478 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 DGUOKQ16854 277 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 ATPAF1Q5TC12 328 aaPredicted RBP14.99□□□□□ -0.01
COL9A3-214ENST00000490398 ZNF788Q6ZQV5 615 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 LHFPL3Q86UP9 236 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 OR2G2Q8NGZ5 317 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 NPRL2Q8WTW4 380 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 C1orf147Q96MC9 270 aaPredicted RBP14.99□□□□□ -0.01
COL9A3-214ENST00000490398 ISG20L2Q9H9L3 353 aaKnown RBP14.99□□□□□ -0.01
COL9A3-214ENST00000490398 FRRS1LQ9P0K9 344 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 DNAJB11Q9UBS4 358 aa14.99□□□□□ -0.01
COL9A3-214ENST00000490398 A0A0A6YYJ9 748 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 A0A1B0GVI7 797 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 MDFIC2A0A1B0GVS7 189 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 J3QLW9 94 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 PLATP00750 562 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 PPIAL4GP0DN37 164 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 PSG2P11465 335 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 ZNF19P17023 458 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 PEX2P28328 305 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 PRB3Q04118 309 aaPredicted RBP14.98□□□□□ -0.01
COL9A3-214ENST00000490398 CD276Q5ZPR3 534 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 RUSC1-AS1Q66K80 236 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 BRD3OSQ6XYD6 125 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 USP43Q70EL4 1123 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 FAM220AQ7Z4H9 259 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 ANGPTL5Q86XS5 388 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 CALHM1Q8IU99 346 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 ACBD7Q8N6N7 88 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 OR10AC1Q8NH08 325 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 TRMT10AQ8TBZ6 339 aaKnown RBP14.98□□□□□ -0.01
COL9A3-214ENST00000490398 C12orf43Q96C57 262 aaKnown RBP14.98□□□□□ -0.01
COL9A3-214ENST00000490398 PELI1Q96FA3 418 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 PCGF1Q9BSM1 259 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 SUCNR1Q9BXA5 334 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 SMPD3Q9NY59 655 aaPredicted RBP14.98□□□□□ -0.01
COL9A3-214ENST00000490398 NLKQ9UBE8 527 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 ZNF222Q9UK12 451 aa14.98□□□□□ -0.01
COL9A3-214ENST00000490398 IGKV1-27A0A075B6S5 117 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 ANKRD61A6NGH8 418 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 ZNF879B4DU55 563 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 FPR2P25090 351 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 HAAOP46952 286 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 ARF6P62330 175 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 ACTC1P68032 377 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 ACTA1P68133 377 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 SCGB2A2Q13296 93 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 OR52I1Q8NGK6 324 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 ITFG2Q969R8 447 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 C4orf36Q96KX1 117 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 DUX5Q96PT3 197 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 SIRPDQ9H106 197 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 ELL3Q9HB65 397 aaPredicted RBP14.97□□□□□ -0.01
COL9A3-214ENST00000490398 RPUSD1Q9UJJ7 312 aaKnown RBP14.97□□□□□ -0.01
COL9A3-214ENST00000490398 MAB21L2Q9Y586 359 aa14.97□□□□□ -0.01
COL9A3-214ENST00000490398 OR2AT4A6NND4 320 aa14.96□□□□□ -0.01
COL9A3-214ENST00000490398 DHRS7CA6NNS2 312 aa14.96□□□□□ -0.01
COL9A3-214ENST00000490398 E9PI62 339 aa14.96□□□□□ -0.01
COL9A3-214ENST00000490398 IGHA1P01876 353 aa14.96□□□□□ -0.01
COL9A3-214ENST00000490398 GABRA2P47869 451 aa14.96□□□□□ -0.01
COL9A3-214ENST00000490398 CEBPDP49716 269 aaPredicted RBP14.96□□□□□ -0.01
COL9A3-214ENST00000490398 DLX1P56177 255 aa14.96□□□□□ -0.01
COL9A3-214ENST00000490398 SLC36A1Q7Z2H8 476 aa14.96□□□□□ -0.01
COL9A3-214ENST00000490398 POC1AQ8NBT0 407 aa14.96□□□□□ -0.01
COL9A3-214ENST00000490398 LY6G5BQ8NDX9 201 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms