RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 XKR8Q9H6D3 395 aa1.2□□□□□ -2.22
CPSF3-205ENST00000489629 HAUS4Q9H6D7 363 aa1.2□□□□□ -2.22
CPSF3-205ENST00000489629 PLEKHF2Q9H8W4 249 aa1.2□□□□□ -2.22
CPSF3-205ENST00000489629 CA10Q9NS85 328 aa1.2□□□□□ -2.22
CPSF3-205ENST00000489629 TREX1Q9NSU2 369 aa1.2□□□□□ -2.22
CPSF3-205ENST00000489629 C21orf62Q9NYP8 219 aa1.2□□□□□ -2.22
CPSF3-205ENST00000489629 FARSAQ9Y285 508 aaKnown RBP1.2□□□□□ -2.22
CPSF3-205ENST00000489629 PPIL1Q9Y3C6 166 aa1.2□□□□□ -2.22
CPSF3-205ENST00000489629 ZNF608Q9ULD9 1512 aaPredicted RBP1.2□□□□□ -2.22
CPSF3-205ENST00000489629 SHROOM3Q8TF72 1996 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 LTBP4Q8N2S1 1624 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 VWA8A3KMH1 1905 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 TRAV8-7A0A075B6U6 113 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 IGHV1-3A0A0C4DH29 117 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 BTNL10A8MVZ5 291 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 FAM25EA8MYX2 175 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 M0R1X1 148 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 PSPHP1O15172 72 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 CHMP2AO43633 222 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 SPOPO43791 374 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 VAPBO95292 243 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 BRI3O95415 125 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 TPM1P09493 284 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 CCL2P13500 99 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 CXCR1P25024 350 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 PSMB5P28074 263 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 HTR2CP28335 458 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 SLC35A1P78382 337 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 RPL18AQ02543 176 aaKnown RBP1.19□□□□□ -2.22
CPSF3-205ENST00000489629 KDSRQ06136 332 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 INCA1Q0VD86 236 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 NAB1Q13506 487 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 ATP6V1FQ16864 119 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 LIN9Q5TKA1 542 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 DUPD1Q68J44 220 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 TMPRSS11AQ6ZMR5 421 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 PID1Q7Z2X4 250 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 FAM19A1Q7Z5A9 133 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 MDP1Q86V88 176 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 ERO1BQ86YB8 467 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 SYS1Q8N2H4 156 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 LINC00337Q8N6G1 96 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 LRRC52Q8N7C0 313 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 OR4D6Q8NGJ1 314 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 NDNFQ8TB73 568 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 DCAKDQ8WVC6 231 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 NUP205Q92621 2012 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 CDS1Q92903 461 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 TNFRSF14Q92956 283 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 RCN3Q96D15 328 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 RDH12Q96NR8 316 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 IP6K3Q96PC2 410 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 NUDT9Q9BW91 350 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 SFXN3Q9BWM7 321 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 BEX2Q9BXY8 128 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 RAB1BQ9H0U4 201 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 ARMC7Q9H6L4 198 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 ANKHQ9HCJ1 492 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 RMND1Q9NWS8 449 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 CLEC2DQ9UHP7 191 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 FLVCR2Q9UPI3 526 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 POFUT2Q9Y2G5 429 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 LRRC42Q9Y546 428 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 V9GYY9 64 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 SBNO1A3KN83 1393 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 JCADQ9P266 1359 aa1.19□□□□□ -2.22
CPSF3-205ENST00000489629 IGHV3OR16-8A0A075B7F1 116 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 IGHV2OR16-5A0A0B4J2B6 119 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 GSTTP1A0A1W2PQM5 241 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 J3QT63 122 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 PSMD11O00231 422 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 MANBAO00462 879 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 PRMT5O14744 637 aaPredicted RBP1.18□□□□□ -2.22
CPSF3-205ENST00000489629 POLR1CO15160 346 aaPredicted RBP1.18□□□□□ -2.22
CPSF3-205ENST00000489629 RNF113AO15541 343 aaKnown RBP1.18□□□□□ -2.22
CPSF3-205ENST00000489629 ALOX12BO75342 701 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 CBR3O75828 277 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 GATBO75879 557 aaKnown RBP1.18□□□□□ -2.22
CPSF3-205ENST00000489629 TTC4O95801 387 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 LHBP01229 141 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 IVLP07476 585 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 HSPD1P10809 573 aaKnown RBP1.18□□□□□ -2.22
CPSF3-205ENST00000489629 HOXB8P17481 243 aaPredicted RBP1.18□□□□□ -2.22
CPSF3-205ENST00000489629 NELFEP18615 380 aaKnown RBP1.18□□□□□ -2.22
CPSF3-205ENST00000489629 NTF3P20783 257 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 APLNRP35414 380 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 PCK1P35558 622 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 ARL2P36404 184 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 P2RY2P41231 377 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 PSMC5P62195 406 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 C2orf80Q0P641 193 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 C18orf21Q32NC0 220 aaPredicted RBP1.18□□□□□ -2.22
CPSF3-205ENST00000489629 FBXO48Q5FWF7 155 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 FAM27D1Q5T7N8 215 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 PRNTQ86SH4 94 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 SETD3Q86TU7 594 aaPredicted RBP1.18□□□□□ -2.22
CPSF3-205ENST00000489629 CYB561A3Q8NBI2 242 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 KLF14Q8TD94 323 aaPredicted RBP1.18□□□□□ -2.22
CPSF3-205ENST00000489629 TMEM159Q96B96 161 aa1.18□□□□□ -2.22
CPSF3-205ENST00000489629 WDR34Q96EX3 536 aa1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms