RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 TRMT10AQ8TBZ6 339 aaKnown RBP11.84□□□□□ -0.51
VAMP4-203ENST00000474047 ZNF418Q8TF45 676 aaPredicted RBP11.84□□□□□ -0.51
VAMP4-203ENST00000474047 TMEM158Q8WZ71 300 aa11.84□□□□□ -0.51
VAMP4-203ENST00000474047 ST8SIA4Q92187 359 aa11.84□□□□□ -0.51
VAMP4-203ENST00000474047 TMIGD2Q96BF3 282 aa11.84□□□□□ -0.51
VAMP4-203ENST00000474047 C12orf43Q96C57 262 aaKnown RBP11.84□□□□□ -0.51
VAMP4-203ENST00000474047 FGF23Q9GZV9 251 aaPredicted RBP11.84□□□□□ -0.51
VAMP4-203ENST00000474047 ERVK13-1Q9NX77 482 aa11.84□□□□□ -0.51
VAMP4-203ENST00000474047 FAM230AA0A1W2PPH8 454 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 RHBDL1O75783 438 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 OCM2P0CE71 109 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 OCMP0CE72 109 aaPredicted RBP11.83□□□□□ -0.52
VAMP4-203ENST00000474047 ZNF20P17024 532 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 FPR2P25090 351 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 KIR3DL2P43630 455 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 GABRA2P47869 451 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 GBX2P52951 348 aaPredicted RBP11.83□□□□□ -0.52
VAMP4-203ENST00000474047 ELF3P78545 371 aaPredicted RBP11.83□□□□□ -0.52
VAMP4-203ENST00000474047 IL18R1Q13478 541 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 SMN1Q16637 294 aaKnown RBP11.83□□□□□ -0.52
VAMP4-203ENST00000474047 OGFRL1Q5TC84 451 aaPredicted RBP11.83□□□□□ -0.52
VAMP4-203ENST00000474047 ZNF841Q6ZN19 808 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 BPIFB2Q8N4F0 458 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 ZNF676Q8N7Q3 588 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 NPRL2Q8WTW4 380 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 APH1BQ8WW43 257 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 SEH1LQ96EE3 360 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 WDR13Q9H1Z4 485 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 FRRS1LQ9P0K9 344 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 CTSZQ9UBR2 303 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 OPN4Q9UHM6 478 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 POLDIP2Q9Y2S7 368 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 KIR2DS1A0A191URI9 304 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 DVL1O14640 695 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 CASQ2O14958 399 aaPredicted RBP11.83□□□□□ -0.52
VAMP4-203ENST00000474047 NDUFB3O43676 98 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 WBP4O75554 376 aaKnown RBP11.83□□□□□ -0.52
VAMP4-203ENST00000474047 PAX8Q06710 450 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 IKZF1Q13422 519 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 ALKBH1Q13686 389 aaKnown RBP11.83□□□□□ -0.52
VAMP4-203ENST00000474047 LRRC10Q5BKY1 277 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 TMEM42Q69YG0 159 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 FDX2Q6P4F2 183 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 C8orf59Q8N0T1 100 aaPredicted RBP11.83□□□□□ -0.52
VAMP4-203ENST00000474047 SYS1Q8N2H4 156 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 PNLDC1Q8NA58 520 aaKnown RBP11.83□□□□□ -0.52
VAMP4-203ENST00000474047 AQP3Q92482 292 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 C10orf35Q96D05 121 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 PELI1Q96FA3 418 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 MED30Q96HR3 178 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 MRPS18AQ9NVS2 196 aaKnown RBP11.83□□□□□ -0.52
VAMP4-203ENST00000474047 CHCHD3Q9NX63 227 aaKnown RBP11.83□□□□□ -0.52
VAMP4-203ENST00000474047 NLKQ9UBE8 527 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 KAAG1Q9UBP8 84 aa11.83□□□□□ -0.52
VAMP4-203ENST00000474047 J3QT63 122 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 TNFRSF13BO14836 293 aaPredicted RBP11.82□□□□□ -0.52
VAMP4-203ENST00000474047 RGS9O75916 674 aaPredicted RBP11.82□□□□□ -0.52
VAMP4-203ENST00000474047 ECDO95905 644 aaPredicted RBP11.82□□□□□ -0.52
VAMP4-203ENST00000474047 IGHA1P01876 353 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 LIPFP07098 398 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 MYL12AP19105 171 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 CAPGP40121 348 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 CCR9P51686 369 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 SLC34A1Q06495 639 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 MRPL28Q13084 256 aaKnown RBP11.82□□□□□ -0.52
VAMP4-203ENST00000474047 MED21Q13503 144 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 CNN3Q15417 329 aaKnown RBP11.82□□□□□ -0.52
VAMP4-203ENST00000474047 TMPRSS11AQ6ZMR5 421 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 Q6ZSR3 168 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 EGFL6Q8IUX8 553 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 OR13C3Q8NGS6 347 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 PP6455Q8WZ26 134 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 MDFIQ99750 246 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 COMMD4Q9H0A8 199 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 ISG20L2Q9H9L3 353 aaKnown RBP11.82□□□□□ -0.52
VAMP4-203ENST00000474047 RASL12Q9NYN1 266 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 HHLA2Q9UM44 414 aa11.82□□□□□ -0.52
VAMP4-203ENST00000474047 PQLC2LA1A4F0 135 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 OR2AT4A6NND4 320 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 H0YAE9 185 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 H0YHG0 523 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.81□□□□□ -0.52
VAMP4-203ENST00000474047 NXPH2O95156 264 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 ISG15P05161 165 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 RPSAP08865 295 aaKnown RBP11.81□□□□□ -0.52
VAMP4-203ENST00000474047 DCKP27707 260 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 FUT6P51993 359 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 NANOS3P60323 173 aaKnown RBP11.81□□□□□ -0.52
VAMP4-203ENST00000474047 ADARB1P78563 741 aaKnown RBP11.81□□□□□ -0.52
VAMP4-203ENST00000474047 SMIM21Q3B7S5 101 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 BTN2A1Q7KYR7 527 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 FAM216BQ8N7L0 139 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 HAVCR2Q8TDQ0 301 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 FGGYQ96C11 551 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 BORCS8Q96FH0 119 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 CHST5Q9GZS9 411 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 DNTTIP1Q9H147 329 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 SMURF1Q9HCE7 757 aa11.81□□□□□ -0.52
VAMP4-203ENST00000474047 FGF20Q9NP95 211 aaPredicted RBP11.81□□□□□ -0.52
VAMP4-203ENST00000474047 NUP50Q9UKX7 468 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms