RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 TECTBQ96PL2 329 aa5.4□□□□□ -1.55
HERC4-209ENST00000473533 CLCC1Q96S66 551 aa5.4□□□□□ -1.55
HERC4-209ENST00000473533 ZNF2Q9BSG1 426 aaPredicted RBP5.4□□□□□ -1.55
HERC4-209ENST00000473533 NAA60Q9H7X0 242 aa5.4□□□□□ -1.55
HERC4-209ENST00000473533 FAM86C1Q9NVL1 165 aa5.4□□□□□ -1.55
HERC4-209ENST00000473533 A0A087WZY1 265 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 B4DEV8 164 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 LMX1BO60663 402 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 EIF1BO60739 113 aaKnown RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 VAMP5O95183 116 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 MBPP02686 304 aaPredicted RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 SLC2A1P11166 492 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 FOSL2P15408 326 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 RPS2P15880 293 aaKnown RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 GLRA1P23415 457 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 SFTPDP35247 375 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 HNRNPKP61978 463 aaKnown RBP eCLIP5.39□□□□□ -1.55
HERC4-209ENST00000473533 SRSF5Q13243 272 aaKnown RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 C14orf28Q4W4Y0 310 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 GALNTL5Q7Z4T8 443 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 LINC00469Q8N7U9 141 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 OR13D1Q8NGV5 346 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 OR14K1Q8NGZ2 314 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 OR51F2Q8NH61 342 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 LMX1AQ8TE12 382 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 ANGPTL4Q9BY76 406 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 TGIF2Q9GZN2 237 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 CHST5Q9GZS9 411 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 BANF2Q9H503 90 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 ZNF160Q9HCG1 818 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 KLRF1Q9NZS2 232 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 C19orf25Q9UFG5 118 aaPredicted RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 ANXA10Q9UJ72 324 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 DMRT1Q9Y5R6 373 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 TNRC18O15417 2968 aaPredicted RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 ELOA3CA0A087WX78 387 aaPredicted RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 A0A0A6YYD4 124 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 FAM157AC9JC47 383 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 H7C1Q1 480 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 CDS2O95674 445 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 HPNP05981 417 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 CTSBP07858 339 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 FBP1P09467 338 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 PGA4P0DJD7 388 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 PGA3P0DJD8 388 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 HLA-DOBP13765 273 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 MSR1P21757 451 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 BCKDHBP21953 392 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 S100GP29377 79 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 PTGER4P35408 488 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 SULT1A1P50225 295 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 HERV-K104P61576 105 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 POLR2GP62487 172 aaKnown RBP eCLIP5.39□□□□□ -1.55
HERC4-209ENST00000473533 SMAD2Q15796 467 aaKnown RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 AKIRIN2Q53H80 203 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 Q6ZSR3 168 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 FAM57BQ71RH2 274 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 C17orf82Q86X59 251 aaPredicted RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 FOXRED2Q8IWF2 684 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 CD300LFQ8TDQ1 290 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 SSC4DQ8WTU2 575 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 SECTM1Q8WVN6 248 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 RBMXL1Q96E39 390 aaKnown RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 NAA11Q9BSU3 229 aaPredicted RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 ZNF286AQ9HBT8 521 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 GSN-AS1Q9NRJ2 163 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 MED29Q9NX70 200 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 VDAC3Q9Y277 283 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 LHFPL6Q9Y693 200 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 V9GYS6 101 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 IGHV5-51A0A0C4DH38 117 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 CDC14CA4D256 554 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 AGPAT2O15120 278 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 SCGB1D2O95969 90 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 CELA2BP08218 269 aaPredicted RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 OR5H8P0DN80 308 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 HYAL4Q2M3T9 481 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 ZNF542PQ5EBM4 170 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 FBXO46Q6PJ61 603 aaPredicted RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 OGFOD3Q6PK18 319 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 FBXW12Q6X9E4 464 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 LIAT1Q6ZQX7 453 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 SHISA5Q8N114 240 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 D2HGDHQ8N465 521 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 TMEM104Q8NE00 496 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 OR14L1PQ8NHC6 308 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 NRSN2Q9GZP1 204 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 TOLLIPQ9H0E2 274 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 ELL3Q9HB65 397 aaPredicted RBP5.39□□□□□ -1.55
HERC4-209ENST00000473533 TCFL5Q9UL49 500 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 AMDHD2Q9Y303 409 aa5.39□□□□□ -1.55
HERC4-209ENST00000473533 ARHGEF17Q96PE2 2063 aaPredicted RBP5.38□□□□□ -1.55
HERC4-209ENST00000473533 NSG1A0A0A6YYJ2 146 aa5.38□□□□□ -1.55
HERC4-209ENST00000473533 ZNF850A8MQ14 1090 aa5.38□□□□□ -1.55
HERC4-209ENST00000473533 FOXI3A8MTJ6 420 aaPredicted RBP5.38□□□□□ -1.55
HERC4-209ENST00000473533 OR2C1O95371 312 aa5.38□□□□□ -1.55
HERC4-209ENST00000473533 F12P00748 615 aaPredicted RBP5.38□□□□□ -1.55
HERC4-209ENST00000473533 IGHV2-5P01817 119 aa5.38□□□□□ -1.55
HERC4-209ENST00000473533 OR8U9P0C7N5 309 aa5.38□□□□□ -1.55
HERC4-209ENST00000473533 FCGR2AP12318 317 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms