RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 MNDAP41218 407 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 GSK3BP49841 420 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 P2RX1P51575 399 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 RAP1GDS1P52306 607 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 AP1S2P56377 157 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 LINC01547P58512 204 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-207ENST00000468384 DYNLT1P63172 113 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 SLC35A1P78382 337 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 QPRTQ15274 297 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 HSP90B2PQ58FF3 399 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 NOXRED1Q6NXP6 359 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 STPG2Q8N412 459 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 TMEM185AQ8NFB2 350 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 OR4M1Q8NGD0 313 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 ZNF675Q8TD23 568 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 CCDC107Q8WV48 283 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 MALSU1Q96EH3 234 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 NSMCE2Q96MF7 247 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 EPYCQ99645 322 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 SF3B5Q9BWJ5 86 aaKnown RBP3.52□□□□□ -1.85
HMGB1-207ENST00000468384 HCAR1Q9BXC0 346 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 RAB17Q9H0T7 212 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 RNF167Q9H6Y7 350 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 FAM118AQ9NWS6 357 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 TAS2R9Q9NYW1 312 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 TMEM181Q9P2C4 612 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 RNF7Q9UBF6 113 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 UBQLN2Q9UHD9 624 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 FOXA2Q9Y261 457 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-207ENST00000468384 TRAPPC4Q9Y296 219 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 MUC12Q9UKN1 5478 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 A0A087X0K7 114 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 IGLV5-52A0A0A0MRZ9 124 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 ERI2A8K979 691 aaKnown RBP3.51□□□□□ -1.85
HMGB1-207ENST00000468384 PRR32B1ATL7 298 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 F8WDY8 70 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 LGALS8O00214 317 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 SNX3O60493 162 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 OR2F2O95006 317 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 GYPAP02724 150 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 B4GALT1P15291 398 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 HPGDP15428 266 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 MERTKQ12866 999 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 PSG7Q13046 419 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 GPR50Q13585 617 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 LDLRAD2Q5SZI1 272 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 CCNYL2Q5T2Q4 361 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 ATAD3BQ5T9A4 648 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 HHATQ5VTY9 493 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 LCN12Q6JVE5 192 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 HACD2Q6Y1H2 254 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 TMEM139Q8IV31 216 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 CROCCP3Q8IVE0 287 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 ZNF561Q8N587 486 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 NANOGP1Q8N7R0 232 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 PRR26Q8N8Z3 221 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 OR52L1Q8NGH7 329 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 ZNF671Q8TAW3 534 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 CD200R1Q8TD46 325 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 LIPHQ8WWY8 451 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 RCN3Q96D15 328 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 CMTM7Q96FZ5 175 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 CFAP36Q96G28 342 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 RBM14Q96PK6 669 aaKnown RBP3.51□□□□□ -1.85
HMGB1-207ENST00000468384 OR5B12Q96R08 314 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 TPPP3Q9BW30 176 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 TSPYL1Q9H0U9 437 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 CSTL1Q9H114 145 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 C11orf68Q9H3H3 251 aaKnown RBP3.51□□□□□ -1.85
HMGB1-207ENST00000468384 YY1AP1Q9H869 796 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 DDX31Q9H8H2 851 aaKnown RBP3.51□□□□□ -1.85
HMGB1-207ENST00000468384 GNB4Q9HAV0 340 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 GPN1Q9HCN4 374 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-207ENST00000468384 MAN2C1Q9NTJ4 1040 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 SLC2A8Q9NY64 477 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 CES1P1Q9UKY3 287 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 WSB1Q9Y6I7 421 aa3.51□□□□□ -1.85
HMGB1-207ENST00000468384 A0A1W2PQD3 144 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 IZUMO1RA6ND01 250 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 M0QX08 132 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 MBD3O95983 291 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 HLA-DOBP13765 273 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 CD24P25063 80 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 SSTR1P30872 391 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 ARRB2P32121 409 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 NR2C2P49116 596 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 SRP9P49458 86 aaKnown RBP3.5□□□□□ -1.85
HMGB1-207ENST00000468384 CNN1P51911 297 aaKnown RBP3.5□□□□□ -1.85
HMGB1-207ENST00000468384 HNRNPA3P51991 378 aaKnown RBP3.5□□□□□ -1.85
HMGB1-207ENST00000468384 AQP5P55064 265 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 GTF2H2Q13888 395 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 UAP1Q16222 522 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-207ENST00000468384 TTC19Q6DKK2 380 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-207ENST00000468384 SULT1C3Q6IMI6 304 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 GTF2H2CQ6P1K8 395 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 Q6ZTC4 211 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 BZW1Q7L1Q6 419 aaKnown RBP3.5□□□□□ -1.85
HMGB1-207ENST00000468384 ZNF573Q86YE8 665 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 CCDC50Q8IVM0 306 aa3.5□□□□□ -1.85
HMGB1-207ENST00000468384 LAX1Q8IWV1 398 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms