RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 OR8S1Q8NH09 359 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 PIGCQ92535 297 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 TMPRSS13Q9BYE2 586 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 MMP27Q9H306 513 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 PPP1R3EQ9H7J1 279 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 GCM1Q9NP62 436 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 C14orf119Q9NWQ9 140 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 ENPP5Q9UJA9 477 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 PPP1R3CQ9UQK1 317 aa9.97□□□□□ -0.81
SQSTM1-206ENST00000466342 IGHV3-64DA0A0J9YX35 117 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 IFNL4K9M1U5 179 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 IGHV2-5P01817 119 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 GTF2A1P52655 376 aaPredicted RBP9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 CDK5R1Q15078 307 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 PRAMEF6Q5VXH4 476 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 TMEM42Q69YG0 159 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 XAF1Q6GPH4 301 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 RPL22L1Q6P5R6 122 aaKnown RBP9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 RBMS3Q6XE24 437 aaKnown RBP9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 MOGAT3Q86VF5 341 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 ZDHHC23Q8IYP9 409 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 RDH10Q8IZV5 341 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 ZNF676Q8N7Q3 588 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 NANOGP1Q8N7R0 232 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 RPS4Y2Q8TD47 263 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 HPSE2Q8WWQ2 592 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 OR5P3Q8WZ94 311 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 SGCDQ92629 289 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 ERGIC1Q969X5 290 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 ITPKCQ96DU7 683 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 RTL8AQ9BWD3 113 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 CDCA4Q9BXL8 241 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 COMMD4Q9H0A8 199 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 DUSP21Q9H596 190 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 ZMAT3Q9HA38 289 aaKnown RBP9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 PLEKHA1Q9HB21 404 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 TRIM36Q9NQ86 728 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 TMEM106BQ9NUM4 274 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 BABAM2Q9NXR7 383 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 BLOC1S6Q9UL45 172 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 HHLA2Q9UM44 414 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 ERGIC3Q9Y282 383 aa9.96□□□□□ -0.82
SQSTM1-206ENST00000466342 ARHGAP32A7KAX9 2087 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 TRBV2A0A0J9YWF9 115 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 H3BSH0 61 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 OGG1O15527 345 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 RGS10O43665 173 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 PLPP2O43688 288 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 ZFPL1O95159 310 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 LALBAP00709 142 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 RPSAP08865 295 aaKnown RBP9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 ADRA2CP18825 462 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 GATA3P23771 443 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 WNT4P56705 351 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 HNRNPA0Q13151 305 aaKnown RBP9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 MPPED2Q15777 294 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 ZNF181Q2M3W8 571 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 CEACAM21Q3KPI0 293 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 CLVS2Q5SYC1 327 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 WDR86Q86TI4 376 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 OR5AK2Q8NH90 309 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 ZNF420Q8TAQ5 688 aaPredicted RBP9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 Q8TCH9 128 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 GATAD2BQ8WXI9 593 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 C22orf15Q8WYQ4 148 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 C10orf35Q96D05 121 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 GAL3ST1Q99999 423 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 MICU1Q9BPX6 476 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 PDCD1LG2Q9BQ51 273 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 MND1Q9BWT6 205 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 FN3KRPQ9HA64 309 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 DCAF16Q9NXF7 216 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 UBAP1Q9NZ09 502 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 ERVK-18Q9QC07 812 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 NPTNQ9Y639 398 aa9.95□□□□□ -0.82
SQSTM1-206ENST00000466342 A0A0G2JMP0 313 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 A0A0X1KG70 313 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 ANKRD61A6NGH8 418 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 A6NIN4 97 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 A6NLC8 198 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 TMEM210A6NLX4 147 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 TMEM178BH3BS89 294 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 J3QLI3 93 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 NRASP01111 189 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 GRPP07492 148 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 PMELP40967 661 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 TAS2R43P59537 309 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 ZNF154Q13106 437 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 IRF3Q14653 427 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 TUSC1Q2TAM9 212 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 CEP78Q5JTW2 689 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 PLCXD3Q63HM9 321 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 DMKNQ6E0U4 476 aaPredicted RBP9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 MOB3CQ70IA8 216 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 PRSS48Q7RTY5 328 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 C1orf87Q8N0U7 546 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 SIGLECL1Q8N7X8 197 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 OR1M1Q8NGA1 313 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 OR4M2Q8NGB6 313 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 OR51A4Q8NGJ6 313 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms