RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 ADAM20O43506 726 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 GYPAP02724 150 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 ISG15P05161 165 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 RPSAP08865 295 aaKnown RBP9.56□□□□□ -0.88
COL28A1-203ENST00000435823 CCDC159P0C7I6 412 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 ZNF20P17024 532 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 MYL12AP19105 171 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 NPY4RP50391 375 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 GBX2P52951 348 aaPredicted RBP9.56□□□□□ -0.88
COL28A1-203ENST00000435823 HOXA4Q00056 320 aaPredicted RBP9.56□□□□□ -0.88
COL28A1-203ENST00000435823 SCGB2A2Q13296 93 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 HAGHLQ6PII5 290 aaPredicted RBP9.56□□□□□ -0.88
COL28A1-203ENST00000435823 LYPD2Q6UXB3 125 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 BTNL3Q6UXE8 466 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 TMPRSS11AQ6ZMR5 421 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 FAM90A1Q86YD7 464 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 ZNF573Q86YE8 665 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 RDH10Q8IZV5 341 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 ZNF676Q8N7Q3 588 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 C12orf43Q96C57 262 aaKnown RBP9.56□□□□□ -0.88
COL28A1-203ENST00000435823 MRI1Q9BV20 369 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 JAM3Q9BX67 310 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 FGF23Q9GZV9 251 aaPredicted RBP9.56□□□□□ -0.88
COL28A1-203ENST00000435823 OR51I2Q9H344 312 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 ISG20L2Q9H9L3 353 aaKnown RBP9.56□□□□□ -0.88
COL28A1-203ENST00000435823 CHCHD3Q9NX63 227 aaKnown RBP9.56□□□□□ -0.88
COL28A1-203ENST00000435823 FRRS1LQ9P0K9 344 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 DNAJB11Q9UBS4 358 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 HHLA2Q9UM44 414 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 SLC7A11Q9UPY5 501 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 EXOSC1Q9Y3B2 195 aaKnown RBP9.56□□□□□ -0.88
COL28A1-203ENST00000435823 ANK3Q12955 4377 aaKnown RBP9.56□□□□□ -0.88
COL28A1-203ENST00000435823 ZFHX3Q15911 3703 aa9.56□□□□□ -0.88
COL28A1-203ENST00000435823 IGHV3OR15-7A0A075B7D8 119 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 EFCAB10A6NFE3 127 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 KIAA1324LA8MWY0 1029 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-203ENST00000435823 H0YJX3 145 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 AKR7A2O43488 359 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 GNAO1P09471 354 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 LIMS3P0CW19 117 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 LIMS4P0CW20 117 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 GLRA1P23415 457 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 NANOS3P60323 173 aaKnown RBP9.55□□□□□ -0.88
COL28A1-203ENST00000435823 GMFBP60983 142 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 CNN3Q15417 329 aaKnown RBP9.55□□□□□ -0.88
COL28A1-203ENST00000435823 DMRTC1Q5HYR2 192 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 CD276Q5ZPR3 534 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 WDR25Q64LD2 544 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-203ENST00000435823 PRIMA1Q86XR5 153 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 PP6455Q8WZ26 134 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 AQP3Q92482 292 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 TFAP2CQ92754 450 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 TMEM80Q96HE8 168 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 ZNF649Q9BS31 505 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 TMPRSS13Q9BYE2 586 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 CHST5Q9GZS9 411 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 COMMD4Q9H0A8 199 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 C7orf69Q9H7B7 122 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 MMP26Q9NRE1 261 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 DIMT1Q9UNQ2 313 aaKnown RBP9.55□□□□□ -0.88
COL28A1-203ENST00000435823 POLDIP2Q9Y2S7 368 aa9.55□□□□□ -0.88
COL28A1-203ENST00000435823 CAB39Q9Y376 341 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-203ENST00000435823 LOC105371242A0A075B767 164 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 IGHV2-70DA0A0C4DH43 119 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 FAM230AA0A1W2PPH8 454 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 PQLC2LA1A4F0 135 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 NKX6-3A6NJ46 265 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 TMEM212A6NML5 194 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 OR4C45A6NMZ5 311 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 TRAPPC2LH3BP13 241 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.54□□□□□ -0.88
COL28A1-203ENST00000435823 J3QT63 122 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 TNFRSF13BO14836 293 aaPredicted RBP9.54□□□□□ -0.88
COL28A1-203ENST00000435823 TMPRSS2O15393 492 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 RHBDL1O75783 438 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 PIPP12273 146 aaPredicted RBP9.54□□□□□ -0.88
COL28A1-203ENST00000435823 HAAOP46952 286 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 FUT6P51993 359 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 AQP4P55087 323 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 ZNF841Q6ZN19 808 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 SLC36A1Q7Z2H8 476 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 OR13C3Q8NGS6 347 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 OR5AK2Q8NH90 309 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 NANPQ8TBE9 248 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 TRMT10AQ8TBZ6 339 aaKnown RBP9.54□□□□□ -0.88
COL28A1-203ENST00000435823 NRG4Q8WWG1 115 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 RAB40AQ8WXH6 277 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 TMIGD2Q96BF3 282 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 BORCS8Q96FH0 119 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 RASL12Q9NYN1 266 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 CNOT2Q9NZN8 540 aaKnown RBP9.54□□□□□ -0.88
COL28A1-203ENST00000435823 NLKQ9UBE8 527 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 KAAG1Q9UBP8 84 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 CTSZQ9UBR2 303 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 INSIG2Q9Y5U4 225 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 AUP1Q9Y679 476 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 JMJD1CQ15652 2540 aa9.54□□□□□ -0.88
COL28A1-203ENST00000435823 TRBV2A0A0J9YWF9 115 aa9.53□□□□□ -0.88
COL28A1-203ENST00000435823 DVL1O14640 695 aa9.53□□□□□ -0.88
COL28A1-203ENST00000435823 ENSAO43768 121 aaKnown RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms