RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 OR5T2Q8NGG2 359 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 OR51A4Q8NGJ6 313 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 OR13C3Q8NGS6 347 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 FBLIM1Q8WUP2 373 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 GATAD2BQ8WXI9 593 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 ADAT3Q96EY9 351 aaPredicted RBP15.58■□□□□ 0.08
SHH-203ENST00000435425 PDCD1LG2Q9BQ51 273 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 WDR13Q9H1Z4 485 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 RASSF4Q9H2L5 321 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 TRIM36Q9NQ86 728 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 HHLA2Q9UM44 414 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 SLC7A11Q9UPY5 501 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 LRCH1Q9Y2L9 728 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 SETD2Q9BYW2 2564 aaPredicted RBP15.57■□□□□ 0.08
SHH-203ENST00000435425 TRBV2A0A0J9YWF9 115 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 SERPINA3P01011 423 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 CCDC159P0C7I6 412 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 SRP14P37108 136 aaKnown RBP15.57■□□□□ 0.08
SHH-203ENST00000435425 HAAOP46952 286 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 RIPK1Q13546 671 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 MICBQ29980 383 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 TEX36Q5VZQ5 186 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 XAF1Q6GPH4 301 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 EGFL6Q8IUX8 553 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 OR10Z1Q8NGY1 313 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 OR5AK2Q8NH90 309 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 ZNF671Q8TAW3 534 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 AQP3Q92482 292 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 TECTBQ96PL2 329 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 COMMD4Q9H0A8 199 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 MMP26Q9NRE1 261 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 PLCXD1Q9NUJ7 323 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 CTSZQ9UBR2 303 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 DNAJB11Q9UBS4 358 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 CLN8Q9UBY8 286 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 OR5V1Q9UGF6 321 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 PSORS1C1Q9UIG5 152 aa15.57■□□□□ 0.08
SHH-203ENST00000435425 A0A0G2JMP0 313 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 A0A0X1KG70 313 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 PQLC2LA1A4F0 135 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 KIAA1324LA8MWY0 1029 aaPredicted RBP15.56■□□□□ 0.08
SHH-203ENST00000435425 SRRM5B3KS81 715 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 TRAPPC2LH3BP13 241 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.56■□□□□ 0.08
SHH-203ENST00000435425 GATBO75879 557 aaKnown RBP15.56■□□□□ 0.08
SHH-203ENST00000435425 ZFPL1O95159 310 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 GLRA1P23415 457 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 CFHR2P36980 270 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 C6orf141Q5SZD1 244 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 ANGPTL5Q86XS5 388 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 ZNF573Q86YE8 665 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 BATF2Q8N1L9 274 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 OR4M2Q8NGB6 313 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 ZNF488Q96MN9 340 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 CCL13Q99616 98 aa15.56■□□□□ 0.08
SHH-203ENST00000435425 CNOT2Q9NZN8 540 aaKnown RBP15.56■□□□□ 0.08
SHH-203ENST00000435425 TMEM212A6NML5 194 aa15.55■□□□□ 0.08
SHH-203ENST00000435425 PTGES3LE9PB15 166 aa15.55■□□□□ 0.08
SHH-203ENST00000435425 TNFRSF13BO14836 293 aaPredicted RBP15.55■□□□□ 0.08
SHH-203ENST00000435425 SYNGR1O43759 233 aa15.55■□□□□ 0.08
SHH-203ENST00000435425 PLATP00750 562 aa15.55■□□□□ 0.08
SHH-203ENST00000435425 TFF1P04155 84 aa15.55■□□□□ 0.08
SHH-203ENST00000435425 PIPP12273 146 aaPredicted RBP15.55■□□□□ 0.08
SHH-203ENST00000435425 MUC1P15941 1255 aaPredicted RBP15.55■□□□□ 0.08
SHH-203ENST00000435425 SRD5A1P18405 259 aa15.55■□□□□ 0.08
SHH-203ENST00000435425 TGM4P49221 684 aa15.55■□□□□ 0.08
SHH-203ENST00000435425 TSEN15Q8WW01 171 aaKnown RBP15.55■□□□□ 0.08
SHH-203ENST00000435425 PP6455Q8WZ26 134 aa15.55■□□□□ 0.08
SHH-203ENST00000435425 C10orf35Q96D05 121 aa15.55■□□□□ 0.08
SHH-203ENST00000435425 CHST5Q9GZS9 411 aa15.55■□□□□ 0.08
SHH-203ENST00000435425 C7orf69Q9H7B7 122 aa15.55■□□□□ 0.08
SHH-203ENST00000435425 BABAM2Q9NXR7 383 aa15.55■□□□□ 0.08
SHH-203ENST00000435425 ANK3Q12955 4377 aaKnown RBP15.54■□□□□ 0.08
SHH-203ENST00000435425 NIPBLQ6KC79 2804 aaeCLIP15.54■□□□□ 0.08
SHH-203ENST00000435425 C2CD3Q4AC94 2353 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 A8MXK9 166 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 J3QT63 122 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 SLC1A7O00341 560 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 TMPRSS2O15393 492 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 NDUFA2O43678 99 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 INMTO95050 263 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 AVPP01185 164 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 OCM2P0CE71 109 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 OCMP0CE72 109 aaPredicted RBP15.54■□□□□ 0.08
SHH-203ENST00000435425 FAM157CP0CG43 387 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 MYF6P23409 242 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 CPT2P23786 658 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 C21orf33P30042 268 aaPredicted RBP15.54■□□□□ 0.08
SHH-203ENST00000435425 FUT6P51993 359 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 CNN3Q15417 329 aaKnown RBP15.54■□□□□ 0.08
SHH-203ENST00000435425 WDR25Q64LD2 544 aaPredicted RBP15.54■□□□□ 0.08
SHH-203ENST00000435425 RPL22L1Q6P5R6 122 aaKnown RBP15.54■□□□□ 0.08
SHH-203ENST00000435425 ZNF841Q6ZN19 808 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 ZFP41Q8N8Y5 198 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 HAVCR2Q8TDQ0 301 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 TMIGD2Q96BF3 282 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 BORCS8Q96FH0 119 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 TMPRSS13Q9BYE2 586 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 SCN3BQ9NY72 215 aa15.54■□□□□ 0.08
SHH-203ENST00000435425 RRP15Q9Y3B9 282 aaKnown RBP15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms