RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 EDARADDQ8WWZ3 215 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 RARRES2Q99969 163 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 FAAP24Q9BTP7 215 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 FBRSQ9HAH7 460 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 SMCO4Q9NRQ5 59 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 NXT1Q9UKK6 140 aaKnown RBP18.4■□□□□ 0.54
CTCF-202ENST00000401394 MMACHCQ9Y4U1 282 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 BLACEA4D250 179 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 SPRY1O43609 319 aaPredicted RBP18.4■□□□□ 0.54
CTCF-202ENST00000401394 CHRM2P08172 466 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 FOSL2P15408 326 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 GALNSP34059 522 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 SMAD4Q13485 552 aaKnown RBP18.4■□□□□ 0.54
CTCF-202ENST00000401394 COL13A1Q5TAT6 717 aaPredicted RBP18.4■□□□□ 0.54
CTCF-202ENST00000401394 LYZL2Q7Z4W2 148 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 OR10G3Q8NGC4 313 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 MMP17Q9ULZ9 603 aa18.4■□□□□ 0.54
CTCF-202ENST00000401394 LYL1P12980 280 aa18.39■□□□□ 0.54
CTCF-202ENST00000401394 ZNF14P17017 642 aaPredicted RBP18.39■□□□□ 0.54
CTCF-202ENST00000401394 ACER2Q5QJU3 275 aa18.39■□□□□ 0.54
CTCF-202ENST00000401394 PRAMEF20Q5VT98 475 aa18.39■□□□□ 0.54
CTCF-202ENST00000401394 DEGS2Q6QHC5 323 aa18.39■□□□□ 0.54
CTCF-202ENST00000401394 TMEM156Q8N614 296 aa18.39■□□□□ 0.54
CTCF-202ENST00000401394 OR11L1Q8NGX0 322 aa18.39■□□□□ 0.54
CTCF-202ENST00000401394 MFSD8Q8NHS3 518 aa18.39■□□□□ 0.54
CTCF-202ENST00000401394 POC1BQ8TC44 478 aa18.39■□□□□ 0.54
CTCF-202ENST00000401394 OCSTAMPQ9BR26 566 aa18.39■□□□□ 0.54
CTCF-202ENST00000401394 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.39■□□□□ 0.54
CTCF-202ENST00000401394 MIOXQ9UGB7 285 aa18.39■□□□□ 0.54
CTCF-202ENST00000401394 B3GALT1Q9Y5Z6 326 aa18.39■□□□□ 0.54
CTCF-202ENST00000401394 EML6Q6ZMW3 1958 aa18.39■□□□□ 0.54
CTCF-202ENST00000401394 RHPN2P1A8MT19 583 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 C1orf196B1AJZ1 125 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 TIAF1O95411 115 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 HEXAP06865 529 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 GSTP1P09211 210 aaKnown RBP18.39■□□□□ 0.53
CTCF-202ENST00000401394 THBS4P35443 961 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 TAF9Q16594 264 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 PHYHD1Q5SRE7 291 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 OR2AE1Q8NHA4 323 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 SHDQ96IW2 340 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 NBEAQ8NFP9 2946 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 NXPH3O95157 252 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 PPP1CCP36873 323 aaKnown RBP18.39■□□□□ 0.53
CTCF-202ENST00000401394 RBMXP38159 391 aaKnown RBP18.39■□□□□ 0.53
CTCF-202ENST00000401394 HSD11B2P80365 405 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 OR52M1Q8NGK5 317 aa18.39■□□□□ 0.53
CTCF-202ENST00000401394 ZNF837Q96EG3 531 aaPredicted RBP18.39■□□□□ 0.53
CTCF-202ENST00000401394 MARS2Q96GW9 593 aaKnown RBP18.39■□□□□ 0.53
CTCF-202ENST00000401394 FAM186AA6NE01 2351 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 GPR37O15354 613 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 NDUFS6O75380 124 aaKnown RBP18.38■□□□□ 0.53
CTCF-202ENST00000401394 TSPAN15O95858 294 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 PGA4P0DJD7 388 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 PGA3P0DJD8 388 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 BLKP51451 505 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 OR56B1Q8NGI3 324 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 SGK3Q96BR1 496 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 ZNF407Q9C0G0 2248 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 CCDC85CA6NKD9 419 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 ZNF727A8MUV8 499 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 IFNA2P01563 188 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 MBPP02686 304 aaPredicted RBP18.38■□□□□ 0.53
CTCF-202ENST00000401394 TMEM225BP0DP42 221 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 SPINK2P20155 84 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 DRD1P21728 446 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 DVL1P1P54792 670 aaPredicted RBP18.38■□□□□ 0.53
CTCF-202ENST00000401394 MRPS21P82921 87 aaKnown RBP18.38■□□□□ 0.53
CTCF-202ENST00000401394 OR9K2Q8NGE7 335 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 PRRX2Q99811 253 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 ZDHHC8Q9ULC8 765 aa18.38■□□□□ 0.53
CTCF-202ENST00000401394 VSTM2BA6NLU5 285 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 G3V3Y1 287 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 POLR2GP62487 172 aaKnown RBP eCLIP18.37■□□□□ 0.53
CTCF-202ENST00000401394 UEVLDQ8IX04 471 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 TMEM234Q8WY98 164 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 SAT2Q96F10 170 aaPredicted RBP18.37■□□□□ 0.53
CTCF-202ENST00000401394 SCRT1Q9BWW7 348 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 AKIRIN1Q9H9L7 192 aaPredicted RBP18.37■□□□□ 0.53
CTCF-202ENST00000401394 TIMM10BQ9Y5J6 103 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 GDF9O60383 454 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 CLN5O75503 358 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 FBP1P09467 338 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 OR8U8P0C7N1 319 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 TBPP20226 339 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 CSNK1EP49674 416 aaKnown RBP18.37■□□□□ 0.53
CTCF-202ENST00000401394 CCL20P78556 96 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 TMEM176BQ3YBM2 270 aaPredicted RBP18.37■□□□□ 0.53
CTCF-202ENST00000401394 OGFOD3Q6PK18 319 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 PLXDC2Q6UX71 529 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 CPEB2Q7Z5Q1 589 aaKnown RBP18.37■□□□□ 0.53
CTCF-202ENST00000401394 OR14K1Q8NGZ2 314 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 FNDC9Q8TBE3 224 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 STT3BQ8TCJ2 826 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 ADAMTS9Q9P2N4 1935 aa18.37■□□□□ 0.53
CTCF-202ENST00000401394 CST4P01036 141 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 OR5AC1P0C628 307 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 DCAF7P61962 342 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 GUK1Q16774 197 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms