RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CEACAM16Q2WEN9 425 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 RIPPLY2Q5TAB7 128 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 TMEM17Q86X19 198 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 PDZD9Q8IXQ8 264 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 OR1S1Q8NH92 325 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 FGFBP3Q8TAT2 258 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 ZNF845Q96IR2 970 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 THOC3Q96J01 351 aaKnown RBP18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 DDA1Q9BW61 102 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 NUP50Q9UKX7 468 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 TIMM10BQ9Y5J6 103 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 C5orf51A6NDU8 294 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 C9orf172C9J069 976 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 CA11O75493 328 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 SFT2D2O95562 160 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 JMJD7P0C870 316 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 DLSTP36957 453 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 BAMBIQ13145 260 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 ARL6IP1Q15041 203 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 BEX5Q5H9J7 111 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 C6orf201Q7Z4U5 140 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 OR5AP2Q8NGF4 316 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 THAP6Q8TBB0 222 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 SPSB1Q96BD6 273 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 Q96M66 194 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 SCGB3A2Q96PL1 93 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 DOCK10Q96BY6 2186 aa18.14■□□□□ 0.5
CCDC88B-203ENST00000359902 C13orf42A0A1B0GVH6 325 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 KANTRA0A1W2PQU2 76 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 BCL2L11O43521 198 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 CYTIPO60759 359 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 SUPT4H1P63272 117 aaKnown RBP18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 CLEC18BQ6UXF7 455 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 ABHD3Q8WU67 409 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 OR2H1Q9GZK4 316 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 WNT5BQ9H1J7 359 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 GPR35Q9HC97 309 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 EHFQ9NZC4 300 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 LRFN1Q9P244 771 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 PFDN2Q9UHV9 154 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 MCTS1Q9ULC4 181 aaKnown RBP18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 IGKV1-27A0A075B6S5 117 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 HTR3BO95264 441 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 CRHP06850 196 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 GABRR1P24046 479 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 HTR5AP47898 357 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 PRSS12P56730 875 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 OVCH2Q7RTZ1 564 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 IQCF2Q8IXL9 164 aa18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 RELL2Q8NC24 303 aaPredicted RBP18.14■□□□□ 0.49
CCDC88B-203ENST00000359902 FAM230AA0A1W2PPH8 454 aa18.13■□□□□ 0.49
CCDC88B-203ENST00000359902 PSMB6P28072 239 aa18.13■□□□□ 0.49
CCDC88B-203ENST00000359902 PPA1Q15181 289 aa18.13■□□□□ 0.49
CCDC88B-203ENST00000359902 SLC9A3R2Q15599 337 aa18.13■□□□□ 0.49
CCDC88B-203ENST00000359902 SKA3Q8IX90 412 aa18.13■□□□□ 0.49
CCDC88B-203ENST00000359902 ZBTB44Q8NCP5 570 aa18.13■□□□□ 0.49
CCDC88B-203ENST00000359902 CPNE4Q96A23 557 aaPredicted RBP18.13■□□□□ 0.49
CCDC88B-203ENST00000359902 NECAB3Q96P71 396 aaPredicted RBP18.13■□□□□ 0.49
CCDC88B-203ENST00000359902 CDC6Q99741 560 aa18.13■□□□□ 0.49
CCDC88B-203ENST00000359902 PPA2Q9H2U2 334 aa18.13■□□□□ 0.49
CCDC88B-203ENST00000359902 PLEKHJ1Q9NW61 149 aa18.13■□□□□ 0.49
CCDC88B-203ENST00000359902 MBD2Q9UBB5 411 aa18.13■□□□□ 0.49
CCDC88B-203ENST00000359902 FIGNL2A6NMB9 653 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 ANGPTL7O43827 346 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 CHRFAM7AQ494W8 412 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 RTL6Q6ICC9 239 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 NMES1Q9C002 83 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 METTL9Q9H1A3 318 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 SLC25A32Q9H2D1 315 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 CHMP1AQ9HD42 196 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 FOXJ2Q9P0K8 574 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 IGKV1D-8A0A087WSZ0 117 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 A0A0B4J2A0 478 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 A0A1W2PNU3 283 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 LNP1A1A4G5 178 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 A8MXK9 166 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 SPRY1O43609 319 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 GLRA1P23415 457 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 LUMP51884 338 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 LINC00052Q96N35 136 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 SHPKQ9UHJ6 478 aa18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 BOKQ9UMX3 212 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-203ENST00000359902 TEX46H3BTG2 121 aa18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 SERPINA5P05154 406 aa18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 ZP3P21754 424 aa18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 PCBD1P61457 104 aa18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 CNN3Q15417 329 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 TMEM42Q69YG0 159 aa18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 ZNF75AQ96N20 296 aa18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 ZNF701Q9NV72 531 aaPredicted RBP18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 RASL12Q9NYN1 266 aa18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 PRR13Q9NZ81 148 aa18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 NEURL1O76050 574 aa18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 CYCSP99999 105 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 RSU1Q15404 277 aa18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 ANKRD55Q3KP44 614 aa18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 NKAPLQ5M9Q1 402 aa18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 RPUSD3Q6P087 351 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-203ENST00000359902 PLXDC2Q6UX71 529 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms